| New model in OGS2.0 | DPOGS214059 |
|---|---|
| Genomic Position | scaffold4242:- 5332-9649 |
| See gene structure | |
| CDS Length | 1269 |
| Paired RNAseq reads | 386 |
| Single RNAseq reads | 914 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012404 (3e-46) |
| Best Drosophila hit | mutagen-sensitive 309 (6e-56) |
| Best Human hit | Bloom syndrome protein (3e-40) |
| Best NR hit (blastp) | ATP-dependent DNA helicase hus2 [Culex quinquefasciatus] (3e-66) |
| Best NR hit (blastx) | ATP-dependent DNA helicase hus2 [Culex quinquefasciatus] (3e-61) |
| GeneOntology terms | GO:0006302 double-strand break repair GO:0004003 ATP-dependent DNA helicase activity GO:0006974 response to DNA damage stimulus GO:0004386 helicase activity GO:0003678 DNA helicase activity GO:0000731 DNA synthesis involved in DNA repair GO:0005524 ATP binding GO:0045003 double-strand break repair via synthesis-dependent strand annealing GO:0008094 DNA-dependent ATPase activity GO:0032508 DNA duplex unwinding GO:0000739 DNA strand annealing activity GO:0005634 nucleus GO:0000732 strand displacement GO:0000403 Y-form DNA binding GO:0043140 ATP-dependent 3'-5' DNA helicase activity GO:0000724 double-strand break repair via homologous recombination GO:0007131 reciprocal meiotic recombination |
| InterPro families | IPR001650 Helicase, C-terminal IPR002121 Helicase/RNase D C-terminal, HRDC domain IPR004589 DNA helicase, ATP-dependent, RecQ type IPR010997 HRDC-like |
| Orthology group | ND |
Nucleotide sequence:
ATGGCTAACGCTTTAAAAGAGATGAAAGTATCGTCTAAGGCGTACCACGGAAAACTCGTA
GACGCCGAGAGAGTCAACGTACAGACGCAGTGGCTCGCAGGAACCATTAAAGTGATCTGT
GCAACGCTTGCTTTCGGAATGGGCGTGGACAAAGGCGACGTCAGATTCGTCATCCACCAC
AGTGTACCGAAGTCTATAGAAGCATACTACCAAGAGACGGGTCGGGCTGGGCGGGACGGC
AAACCGGCTGATTGTATCTTATTCTACTGTTACAGAGACATTGTGCGCCAACGCAACCTC
TATTATCGTGATAGAAGTTTGACGGAGAACTCGAAGAACGTCCACGATGATAACCTTACA
CGTATCAATGAGCTGTGTGAGGACGTGCTTGAATGTCGACGGACCTTCGTACTGAGATAC
TTGGGGGAGACATTCCAAAGCGACAACTGCGGTCCCATGCTCTGCGACAACTGTCAACGA
AGACCGACAAACGAGTTTATACGGCAGGACGTGACGGACGTGTGTCGGGAGATCTATTTT
CTCAGATGCAATCAGTGGGGGAAGGGTGACGCGGTCCGGCTGTTACAACTCTTGCTAATG
AAGAAAATCCTCGCTGAGAAAACCCGTATGAACAAGGACATTGCCAATAATTACCTAATT
CGTGGAGCTGATGTATATAAGCTGTCGTCGAAGTCTGAGCCGATTATATTCTACAAGCGC
CCGCACACTACTAAGAAGCCGGCGACAGCTGTAGCAGCGCCGCTCGTACAAGACGTTGAC
CAACAAATTAAACAAGTCGAGGATAAGGCTTACGAAGAGCTCGTTGAGGAAATAAAGAAC
ATAGCAAAGGAGTCAGACGTGGCGCTTTGGACGCTGTACCCACAGATGGCGCTACGTTAT
ATGGCGGAGAAGCTACCGGAAACGGCGGAGGAAATGCTCAAGATACCTCACGTTACCAAC
GCCAACTATAATAAGTATGGCTTCCGGTTGCTACCCATCACCCTCAAGTACTCCATGGAG
AGGCTTAAACTCGAAATGACTTTGCAAGACCAGGAAATTAGCGAAGCCTTCGACGACGAG
GAGCCCTCCGCGGGACCCTCCACGGTCAGCCCTCGAGTGTCCTTCAGAAATAATAGGAGC
TACCGATCAAGAAAATCGAAATCGGCCAGAGCTGGTGTGAAAAAACCATATAAAAAAGAC
AATAAAGCGTTCAAGAAGTTCAAAAAAGGTGCAACAGGAACAATGCCCCGGCCGGGGACA
TTTTTATAA
Protein sequence:
MANALKEMKVSSKAYHGKLVDAERVNVQTQWLAGTIKVICATLAFGMGVDKGDVRFVIHH
SVPKSIEAYYQETGRAGRDGKPADCILFYCYRDIVRQRNLYYRDRSLTENSKNVHDDNLT
RINELCEDVLECRRTFVLRYLGETFQSDNCGPMLCDNCQRRPTNEFIRQDVTDVCREIYF
LRCNQWGKGDAVRLLQLLLMKKILAEKTRMNKDIANNYLIRGADVYKLSSKSEPIIFYKR
PHTTKKPATAVAAPLVQDVDQQIKQVEDKAYEELVEEIKNIAKESDVALWTLYPQMALRY
MAEKLPETAEEMLKIPHVTNANYNKYGFRLLPITLKYSMERLKLEMTLQDQEISEAFDDE
EPSAGPSTVSPRVSFRNNRSYRSRKSKSARAGVKKPYKKDNKAFKKFKKGATGTMPRPGT
FL