Genomic Position | scaffold1731:- 26288-27706 |
---|---|
See gene structure | |
CDS Length | 1419 |
Paired RNAseq reads   | 1157 |
Single RNAseq reads   | 2827 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007995 (6e-13) |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (0.0) |
Best NR hit (blastx)   | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (0.0) |
GeneOntology terms    | GO:0003964 RNA-directed DNA polymerase activity GO:0003723 RNA binding GO:0006278 RNA-dependent DNA replication |
InterPro families   | IPR000477 Reverse transcriptase |
Orthology group | MCL10012 |
Nucleotide sequence:
ATGAAGAATCGGAAAGCGGTGGGACCTGACGATATTCCGATCGAAGCGTGGAAATCATTG
GGCTCTCTTGGTGTGCTCATACTGACGGACCTTTTTAACCGCGTCTTGAACACTGGGACT
ATGCCACATCAGTGGCGTTATAGTTACATTACCCCTATATACAAAGGCAGGGGCAGTGTT
CAAGATTGTGGTAGTTATAGGGGCGTTAAGATCATGAGTCACACCATGAAGCTCTTTGAG
CGTATGATCGACCTCAGGCTCCGCCGAGAGTGTACTGTCTCGGAATGTCAATATGGATTT
CAGCCAGGATCGGGCACCTTGGACGCCATCTTTGCCATCAGAACTCTGATGGAGGCATAC
AGGGAAAAAAGGAGAGCTCTGCATGTCGCATTCCTAGATCTGCAGAAGGCCTTTGACTGC
GTGCCTCGTCAATGTATCTGGTGGGCATTGCGATTCAAAGGGATCCCTGAGGCCTATATT
GACATCATCAGAGACATGTACCGCGATTCCGTTTCAATGGTTAGGACTGCTGTTGGCGAT
ACAAAACCCTTTCCGATCTCAGTAGGGCTTCACCAAGGCTCGGCTCTTAGCCCCTTCTTG
TTCAATGTAGTGCTGGACACTGTCTCGGCTAACATCCAGGACCAGCCTCCATGGCTGATG
ATGTATGCCGATGACATAGCGCTCATTGATGAGAGCAGGTTGACGCTAGAGCGAAGAGTG
AACCTCTGGAAGGGTACGCTTGAGAACGGTGGTCTTAAACTAAATGTGACGAAGACCGAG
TACATGGCTTGCGGAAGCCCGGACTCTTGCACTATCCATATAGGTCCTGAACCAGCCGTT
AAGTCGGAAAAGTTCAGGTACCTTGGATCTATTCTGCATGAGTCCGGAGGCATCGATCAC
GATGTCCAAGCCCGGATCAGCGCTGCTTGGGCGAAATGGCGTGACGTCACAGGTGTGGTC
TGCGATCGCAGAATACCTACCAAGCTCAAGGGAATAATATACAAGAGCATAATCCGACCG
GTTCTCTTATATGGAAGCGAATGTTGGCCAACACTGTCCAGGCACACTCAGGAGCTTCAC
GTCACGGAGATGAAGATGCTGAGGTGGATGTGTGGCGTAACGCGGGCTGACCGTATACGT
AACACATTTATCCGAGGTAGTCTTGGAGTCCGTGACGTAGCGGATAAGCTTCAAGAGAGT
CGCCTGAGATGGTATGGCCACGTTGCACGCCGGCCTGAGAATTACGTCGGAAAAATTTGC
CTTGATATGTCGGTCCCTGGAGCAAGACCCCCAGGACGCCCAAGAAAGCGATGGCTGGAC
ACCGTGAAGCAGGATATGAGAGCCAATGGACTTACCACCGCGGATGCTAAAGACCGTGCA
AAGTGGAGGAGTTTGAGCAGGAAGGCAGACCCTGGCTAA
Protein sequence:
MKNRKAVGPDDIPIEAWKSLGSLGVLILTDLFNRVLNTGTMPHQWRYSYITPIYKGRGSV
QDCGSYRGVKIMSHTMKLFERMIDLRLRRECTVSECQYGFQPGSGTLDAIFAIRTLMEAY
REKRRALHVAFLDLQKAFDCVPRQCIWWALRFKGIPEAYIDIIRDMYRDSVSMVRTAVGD
TKPFPISVGLHQGSALSPFLFNVVLDTVSANIQDQPPWLMMYADDIALIDESRLTLERRV
NLWKGTLENGGLKLNVTKTEYMACGSPDSCTIHIGPEPAVKSEKFRYLGSILHESGGIDH
DVQARISAAWAKWRDVTGVVCDRRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQELH
VTEMKMLRWMCGVTRADRIRNTFIRGSLGVRDVADKLQESRLRWYGHVARRPENYVGKIC
LDMSVPGARPPGRPRKRWLDTVKQDMRANGLTTADAKDRAKWRSLSRKADPG