New model in OGS2.0 | DPOGS202505  |
---|---|
Genomic Position | scaffold563:- 116597-118771 |
See gene structure | |
CDS Length | 756 |
Paired RNAseq reads   | 268 |
Single RNAseq reads   | 796 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001425 (2e-119) |
Best Drosophila hit   | MBD-like, isoform B (6e-44) |
Best Human hit | methyl-CpG-binding domain protein 2 isoform 1 (1e-56) |
Best NR hit (blastp)   | methyl-CpG binding transcription regulator, putative [Ixodes scapularis] (4e-85) |
Best NR hit (blastx)   | methyl-CpG binding transcription regulator, putative [Ixodes scapularis] (2e-82) |
GeneOntology terms    | GO:0005634 nucleus GO:0003677 DNA binding |
InterPro families    | IPR001739 Methyl-CpG DNA binding IPR016177 DNA-binding, integrase-type |
Orthology group | MCL11935 |
Nucleotide sequence:
ATGAATATTTCAATAGAAAAGAAAAAATCTGATTGTGATGCTTTGCCTAAAGGTTGGCAA
AGAGAAGAAGTTGTGAGAAAAACCGGGCTTTCGGCTGGAAAAGTTGATGTTTATTACTAT
AGTCCAACAGGTAAAAAGTGTCGCAGTAAATCCGAGCTAGTACGTTATCTTGGTGATAGT
GTGAACTTGTCATATTTTGACTATCAACAAGGTCAACTAAACACAATGCTCCTATGCAAG
GTCAAGAAGCAAGCTCGGGCGCAGTATGAATACAACAGGGGTTTTCGTTCCGATGCCTCA
CTTGTGCCTCCTATAAGACAGACCGCATCTATATTTAAACAACCAGTAACTGTCTACAAA
ACACAGGAGAGCAAAGTCAAGACTGATCTGAAACAAGGAACACAAGAAAAACCGAAGCAA
TTATTCTGGGAAAAACGTCTCGAAGGCTTAACTGCATGTGATGCCAATGGTGTAATAGGA
ACCACCTCACTGCCAAAGTACATAAAACCCTTAGGCCCGTACACATCAGATGCAACAACA
ATACAATCACTCGCTACAGCCTTACATGTGTCATCTCAACCAATTACAGGACAAACGGGA
TCCAAACAAACTATCATGGAGAATCCAGGGGTTTTTTTAAATCCAGAGCAGCCGTTGATA
GCGGCTGTGACTATAACGAAGGATGATCTGCGTCGCCAGGAGGAGAGAGTGGAGAGGGCT
CGGCTGAGACTGCAGGAAGCCTTGGCCACCGCATAG
Protein sequence:
MNISIEKKKSDCDALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKCRSKSELVRYLGDS
VNLSYFDYQQGQLNTMLLCKVKKQARAQYEYNRGFRSDASLVPPIRQTASIFKQPVTVYK
TQESKVKTDLKQGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKPLGPYTSDATT
IQSLATALHVSSQPITGQTGSKQTIMENPGVFLNPEQPLIAAVTITKDDLRRQEERVERA
RLRLQEALATA