New model in OGS2.0 | DPOGS204300  |
---|---|
Genomic Position | scaffold333:+ 80812-84545 |
See gene structure | |
CDS Length | 1893 |
Paired RNAseq reads   | 461 |
Single RNAseq reads   | 1107 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007576 (9e-51) |
Best Drosophila hit   | ND |
Best Human hit | E3 ubiquitin-protein ligase RNF168 (1e-19) |
Best NR hit (blastp)   | PREDICTED: similar to ring finger protein 168 [Apis mellifera] (2e-35) |
Best NR hit (blastx)   | PREDICTED: similar to ring finger protein 168 [Apis mellifera] (1e-24) |
GeneOntology terms    | GO:0008270 zinc ion binding GO:0005515 protein binding GO:0016874 ligase activity GO:0005694 chromosome GO:0046872 metal ion binding GO:0006281 DNA repair GO:0016568 chromatin modification GO:0005634 nucleus GO:0006974 response to DNA damage stimulus |
InterPro families    | IPR001841 Zinc finger, RING-type IPR018957 Zinc finger, C3HC4 RING-type IPR013083 Zinc finger, RING/FYVE/PHD-type |
Orthology group | MCL40171 |
Nucleotide sequence:
ATGGCTGCCAAGTCAAAGAGGCGGCTGTCTAAAATTGAAAATAAATTGTTAAAGTTAGAT
AAATTAGAACTCAAAGATGTTATTTGTTCCATTTGTCAGTCAATTTTAATAGAACCAGTG
ACTCTTCCATGCTACCATGACTTTTGTCAAAGTTGTTTTAATGGAAGTATAGAAAATAAT
GCTTTGTGTTGTCCTCTATGTCGATTGAGAATTGGTTCTTGGGTTCGTACAGCGACAAAA
CAAAAGAACATAGTAAATATTAAACTATGGAATTTCATAAAAGATAAATTTGCAACAGAG
GTTGATAAGAAAGTTAAAGGAGAAGATGTAGGACTGTCACCAGAAACAACTGTAACTCGT
TTAAGTGAACCTGGTGAAATTAGATCTGAATATGAAGCTGAATTAAAAAGACTTAGATTA
GAGAGACTGCGTCTTGAACAGAAACATTTCCAAGAGACAGAGATTCTTATTGAAAAACTT
CATAAAGAAGAAGAAGAGGCACACAGAAAATATTTAGAAAACCTTAAACAAGATGAGTTA
TTGGCTATAAAGTTGCAGCAAGAAAGTAAAATAAATATAACTACATCCAATATGATGAAG
AAGAAGAAAACCTTGCCCACCAAACCTAGATTAAAACCTACAACTATTGACTGCTATTTA
ACTAAACCAGTTGAAGCCTCATTTTCTAAGGGAAGCCCCATTTTGACTGACGATAATACA
AGCACTAATGACTCCATACCTATACTACCATCCCACAAAACTAACAGTAGATTATCACCA
GAAATGTTACCTAGCTATGGAAAGCTTCTAAAAAACTTTTTGGACAAGGAACTTAAAACT
GGCACTGTTCTATGGAATAAAGAGAATGGTAAAAGAAAACTAAAAGATAAGGAAGAACAG
CCATCTTGTGGAAAAGAAATAGAAAAGAATAATGAAAAATGTCTTGTGAAAACGAGGAAT
GGTATGCAATCATTAGTTGTTTCCTTGCCATTACCATCAACTGGATTACTGCATCATAAA
TCTTCAATGCCAGAAAATAGAAATATAGAAACCGGGAGTGTTGATTCTATGAGACAAGAA
TTGTGTTATTTTAAACCTATTGAAGGAAATACTCCAACAAGTTTTACACCAATCAAGGAC
CCCTTACGAATACCAAGCATCAAACCTGATAATAACCAAGCTCTGCCTCCAAATAATCCT
TCACCAAGCAGAGCTCAGTTTTTGGAGGGTTTATGTACACTAAGGAATTTGTCTTTGGCT
CACAGGCTGCCATCTGCTTTTGTTATCGCACTAGGAATATTACAAACCAACAAGGAGATA
TCAAAAAATTATGGAGCAACTACAAGATCAAAGGCCAAGAAAAATTCCACGTCAAATCCT
TGGGCGACACCAGCAGTGAACTCTCGACGTACTACATACAATCGAAATAAACAAGTGGAT
ACTATTGAAGGTATAAGTAAATTAAATTCTGAAGTTTCACTAAGGCGGACCAGGTCGATG
GGGAGCATCACTAAGGATGACAATGAAATGACGCCAAAGAAGAAGGTCAAAGTGAAAAAA
TTCAATTCAGAACGAAAACCATATTTAAGGAGTGATTCGAAGCGGATACAGAATAATGAT
TCGTGTAGCCCACCTACAGCAGCAACAATTAATAATAATGTGAAATTAGCTCTTAAAAAT
TTGTCTAGTCCATTGAAAAATTGTGATGTGAAAAGCATATTATGCGAGCAGCTTAGGATT
GAAAAAATAATAGAACAAGAGAAAAGTGACTTGGAGTTAGCACTGAAGATGGACGCCGAG
TTGAATGGAAGACGAACGTTGAGGCGGACTGCAACCAAGCGCCAAGTAACGTTGAACTAC
GCTCTAAGACCTGCTAAGAAACTTAAAGTTTAA
Protein sequence:
MAAKSKRRLSKIENKLLKLDKLELKDVICSICQSILIEPVTLPCYHDFCQSCFNGSIENN
ALCCPLCRLRIGSWVRTATKQKNIVNIKLWNFIKDKFATEVDKKVKGEDVGLSPETTVTR
LSEPGEIRSEYEAELKRLRLERLRLEQKHFQETEILIEKLHKEEEEAHRKYLENLKQDEL
LAIKLQQESKINITTSNMMKKKKTLPTKPRLKPTTIDCYLTKPVEASFSKGSPILTDDNT
STNDSIPILPSHKTNSRLSPEMLPSYGKLLKNFLDKELKTGTVLWNKENGKRKLKDKEEQ
PSCGKEIEKNNEKCLVKTRNGMQSLVVSLPLPSTGLLHHKSSMPENRNIETGSVDSMRQE
LCYFKPIEGNTPTSFTPIKDPLRIPSIKPDNNQALPPNNPSPSRAQFLEGLCTLRNLSLA
HRLPSAFVIALGILQTNKEISKNYGATTRSKAKKNSTSNPWATPAVNSRRTTYNRNKQVD
TIEGISKLNSEVSLRRTRSMGSITKDDNEMTPKKKVKVKKFNSERKPYLRSDSKRIQNND
SCSPPTAATINNNVKLALKNLSSPLKNCDVKSILCEQLRIEKIIEQEKSDLELALKMDAE
LNGRRTLRRTATKRQVTLNYALRPAKKLKV