| New model in OGS2.0 | DPOGS207841 |
|---|---|
| Genomic Position | scaffold886:+ 37207-51552 |
| See gene structure | |
| CDS Length | 5217 |
| Paired RNAseq reads | 5413 |
| Single RNAseq reads | 12791 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005523 (0.0) |
| Best Drosophila hit | Spt6 (0.0) |
| Best Human hit | transcription elongation factor SPT6 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to Spt6 CG12225-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to Spt6 CG12225-PA [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0003682 chromatin binding GO:0005703 polytene chromosome puff GO:0005705 polytene chromosome interband GO:0006366 transcription from RNA polymerase II promoter GO:0005700 polytene chromosome GO:0000176 nuclear exosome (RNase complex) GO:0003711 transcription elongation regulator activity GO:0006354 RNA elongation GO:0016788 hydrolase activity, acting on ester bonds GO:0006357 regulation of transcription from RNA polymerase II promoter GO:0003723 RNA binding GO:0005515 protein binding |
| InterPro families | IPR006641 YqgF/RNase H-like domain IPR022967 RNA-binding domain, S1 IPR000980 SH2 motif IPR003029 Ribosomal protein S1, RNA-binding domain IPR017072 Transcription elongation factor Spt6 IPR023323 Tex-like domain IPR023097 Tex RuvX-like domain IPR012340 Nucleic acid-binding, OB-fold IPR016027 Nucleic acid-binding, OB-fold-like |
| Orthology group | MCL11005 |
Nucleotide sequence:
ATGGCAGATTTTTTGGATTCAGAAGCTGAGAGCGAGGTAGAATCTGAAGAGGATGAGAAA
CCAACTGAGCGTAAAAAGCCAAAGCGTAAAGCTGCCGTTCAAAGTGATGATGAAGACGAA
GAGGAAGAGGATGATGAAGAAAGGCTACGCGAGGAGTTGAAGGATCTTATAGATGATGCA
CCCATAGAAGAATCTGGAAGTGATGGTGAGGATTCAGATGCCAGTGTTGGCCCAAAGAAA
AGAAAAAAAAGTGATGATGAGCTTGATGATAGATTGGAAGACGAAGATTATGACCTCATC
GAGGAAAATCTTGGTGTTAAAGTTGCTAGAAATAAATTTAAGAGATTGAGACGTTTGGAG
GATGATGACAGTGACAATGAAGGGGCTGATGACCCTGATTTGGAGAGGGAGGTTATAGCT
GAGAAACTCTTTGTTGGTGGCTCCGATGAGGAGGATGAAAATCGTTCAGAATCAGCTGCA
CCGAGGGAAATAGAATATGACGATGAGAATGAAGATATGGAGTCGGATGCTGATGACTTC
ATTGTTGACGACGACGGGAGACCCATAGCTGAAAGAAAGAAAAAACGCAAACCTATTTTT
ACTGATGCGTCATTACAAGAGGGTCAGGATATATTTGGTGTAGATTTTGATTATGATGAG
TTTGAGAAGTATGGTGAAGAAGACTATGAAGATGAAGATGATGAGGATTTGGATGAATAT
ATTGAGGACGAGGAAGAAGAAGGCGGAGAGAGAAGAAGGACTAAAAAGGGTAAAGCGAAA
CGTCCAAGTAAAAAGTCAATATTTGAAATATATGAGCCTAGTGAGCTGAAGCGGAGTCAC
TTCACCGATTTAGATAATGAGATAAGAAAAACTGATGTGCCGGAGCGTATGCAAATCCGT
GAGGTGCCTATAACACCAGTCGAAGAAGGCAGTACGGAGTTGGAAGATGAAGCTGAATGG
ATTTATAAACAGGCGTTCCTTAAAGCGCCCGTGTCCAAAGCTGATTCACAGGAAGCGAGG
GAACGAACTCGGCGTACCGGAGGTACAGTGATAAAGATTCGTCAGGCCTTAGATTTTATG
AGAAACCAGACATTGGAAGTTCCTTTTATAGCGTTTTATCGTAAGGAGTATGTGCAGCCC
GAATTAAGTATTAATGATCTGTGGAAGGTTTATAAGTATGATGCCAAGTGGTGTCAATTG
AAACAGCGCAAGGAGAATTTATTGCGCCTTATAGAAAACATGAGGGAGTTTCAGCTTGAT
AAAGTTATGGCTGATCCGGACGCCCCCATACCCGACACCATGAGACTTATTAAGGATGAA
GATATTGATAGACTGAAGAACATACAGACGCCGGAGGAGTTGCGTGATGTCCACACACAT
TTCCTCCTGTACTATTCACACGACTTACCTGAGATGCAGAAGGTACAAAGAAGTAAGGAG
AGGAAGAAGGAGCTAGAAGAGAAAAATACCGGAGGTACAGTGATAAAGATTCGTCAGGCC
TTAGATTTTATGAGAAACCAGACATTGGAAGTTCCTTTTATAGCGTTTTATCGTAAGGAG
TATGTGCAGCCCGAATTAAGTATTAATGATCTGTGGAAGGTTTATAAGTATGATGCCAAG
TGGTGTCAATTGAAACAGCGCAAGGAGAATTTATTGCGTCTTATAGAAAACATGAGGGAG
TTTCAGCTTGATAAAGTTATGGCTGATCCGGACGCCCCCATACCCGACACCATGAGACTT
ATTAAGGATGAAGATATTGATAGACTGAAGAACATACAGACGCCGGAGGAGTTGCGTGAT
GTCCACACACATTTCCTCCTGTACTATTCACACGACTTACCCGAGATGCAGAAGGTACAA
AGAAGTAAGGAGAGGAAGAAGGAGCTAGAAGAGAAAAAGAAGTTAGCACGTGAAGAAGCA
GAGAAGAACGGCGAGGATCCAGAAGAGGCGGCGGCTGCTGTGGTCGCCGCTGAACCTGAT
GATGAAGAGGCCACAGAGGTTAAATATGCTGTCCGCTCTGGACCATACGAACTCTGCAGG
AAGGCTGGCATCGAGCCTCTGGTGAAGAAATTCGGTCTCTCCCCGGAGCAGTTCGCTGAG
AACGTCCGAGACAACTACCAGCGTCACGAGGTGGAACAACAACCTGTACCGCCGCTAGAG
GCCGCCGCCGAATATGTGTCTCCGGGCGGGTCCTGCAGTGAGGTGGTCCGTCGCGCCGTG
TATATGTGTGGTGTGCAGTTGGCTCGGGAACCTCTACTACGTGCGACGCTTAGGGATGCT
TTGAGAGAGAGGGCCACCGTCACAACCAAACCTACCCCGCGCGGTCTGAAGGAAATCGAT
GAGGGACATCCCTGCTACAGCATGAAATATTTGAAAAAGAAACCCGTTCGTGACCTCACC
GGGGACCAGTTCCTGAGGTTGACGATAGCGGCGGACGACAAGCTGCTAGAGTTGACGATC
AGCGAACAGATCGAGGGAAACACGAGCCCCAGCTACCTAGAGGAACTGAAACAGTTGTAT
CAAAAAGACGAGTTTGCGGCCACAGTTCAGGCGTGGAACGAGCTACGGGCGCAGGCCGTG
ACACTGGCGCTCACTAAGATCGTTATACCAGAACTGAGACGAGAACTACACGCGGTGCTG
TTGCAAGAAGCTAAGGATTATGTGCTCAAGTGTTGTCGACGTCGTCTGTATGATTGGCTC
AAGGTGGCTCCTTATGAGTCCAGGGTGTCTGATGAGGACGACGAAGAATGGGACTCTTCA
AATGGTCTCCGTGTCATGTCTATCGCTTACGTGCCGGAGCGCACTCAGTGCGCGTTCGCC
ACGGTGGTCGCGGCGGCCGGGGAGGTGGTCGACCATCTGAGACTGCCGCATCTCCTGCTG
AGGAGGAACGCCTGGGACGCCGCGGAGAGACGGAACAAGGAGGCTGACATGACGTCCCTC
AGGCGGTTTATCCAGCGTAAGAAGCCCCATGTGATCGTGATCGGCGGCGAGTCTCGTGAG
GCGTTGTCGGTGAAGGCGGACGTCGCGGAGTGCGTGGCGCAGCTGGTGGATGATGAACAG
TTCCCGAGGATACCAGTCGAGATAGCCGACAACACCATCAGCAAAATATACAGCAATAGT
ATAAGAGGACGGAACGACTTCAGAGAATATCCGGAAACGTTGAGGCAAGCGATTTGTCAG
GCGCGTCTCTTACAAGATCCCCTGATGGAGATATCGCAGCTCTGTGGCCCCGACGAAGAA
ATACTTTGTCTACGATACCATCCGCTACAAGACCAGTTGCCTAAAGAGGACCTGTTAGAA
GGAATCGAGTTGGAGTTCGTTAACAGGATTAATGAAGTCGGCGTAGACGTTAATGAAGCG
GTTCTGACCGGGCGAGGGACTGAGTTGCTACAATTCGTTTGTGGTTTAGGGCCGAGGAAG
GCGCAGGCTCTCATAAAGTTATTCAAACAAACTAACCAGAAGCTAGAGAACAGGACCCAA
TTGGTCACGGTCTGTCACATGGGGCCGAAGGTTTTCATCAATTGCTCCGGTTTTATAAGG
ATCGATACCAGCAGTCTCGGTGACAGCACGGAGGCGTATATAGAAGTATTGGACGGTTCC
AGAGTTCATCCGGAAACGTATGAATGGGCGAGAAAAATGGCCGTAGACGCTCTGGAGTAC
GAGGACGAAGACGCGAACCCAGCCGGAGCCCTGGAGGAGATTCTGGAAGCGCCCGAAAGG
TTGAAAGACTTGGATTTAGACGCGTTCGCAGAGGAATTAGAAAGGCAGGGTTTCGGTAAT
AAGAGCATAACGCTCTACGACATCAGAGCCGAATTGAACTCTAGATACAAAGATCTCAGA
GTCGCATATCGATCGCCGACACCCGAGGAATTATTCGATATGTTGACCAAAGAGACCCCG
GAAACTCTGTATGTTGGTAAAATGGTGCTGGCAACCGTCATAGGTATCTCGCATAGGAAA
CCTCAAAGGGAAATGTTAGATCAGGCGAATCCCGTCAGAAATGACGAAACCGGATTGTGG
GAATGTCCCTTCTGCCACAAGAACGACTTTCCCGAACTCTCTGAGGTATGGAATCATTTC
GACGCAGGCGCGTGTCCGGGTCAAGCGACGGGGGTTAGGGTCAGATTAGACAACGGCCTG
TCGGGCTACATACATATAAAGAACCTCTCAGACAGACACGTCACTGACCCCACAGAGAGG
GTCAGAATAGGCCAGACCATACATTGTAGGATATTAAAGATTGATGTTGAAAGATTTTCG
GTAGATTGTTCCTCTAAATCGTCTGACTTGTTGGATAAGAATAATGAGTGGAGACCACCA
AAAGATCCTTACTACGATCAAGAATCTGAGGACAAAGATGTCCGAAAAGACACAGAGACT
AAGCAGACTAAAGAGCGAATGCAGTATGTGAAACGAGTTATAGTACATCCAGCATTCCAC
AATATAAGTTTCGCTGAAGCCGAAAAGCTCATGGAGAACATGGCACAAGGGGAAGTCATA
GTTAGGCCTAGCAGTAAGGGATCTGATCACCTGACAGTCACCTGGAAGGTGGCAGACGGT
ATATGCCAGCACATTGACGTGCGGGAAGAGGGCAAAGAGAATGCCTTTTCTTTAGGTCGT
AGTCTTTGGATACAGGGATCAGAGTTTGAAGACTTGGATGAAATTATCGCGAGATACGTT
ACACCTATGGCGGGTCATGCGAGAGACCTCATTGCTTACAAATACTACAAGAACCTTGGC
GGCATGAGAGACAAGGCTGAAGAGATTCTCAAAGACGAGAAGTCGAAGAATCCCAATAAG
ATTCACTACCCTGACTTCTTGACGCCAGCCATCCCTCGCCATAAACCTCAACCTTCCGTG
TACACCGAGCCATCAGACTGGCAGAAGGCGGCGGAGGACTGGGTGCGGCACCGAGCCCGG
GACGAGAGTACCTCGACTCCTCGACACGCAACGCGTACACCCCGCCACGACGCTCGCGCC
ACCCCCCGCCACGACTCTCGCGGCACCCCTCGCCACGACTCACGCGGCACACCGCGGCAC
GACGCCCGCTCGTCGGTCCACAGCACGCCACACAGCACGCCTCACGCCACGCCACACGGC
CACACGTCCTCCGGCCGGTCGTCACGCTCGCACTCCGCACGTTCCACGCCGCACACGAAC
ACGTCGCCGCGCTCTATGTCATTAGGGGACGCGACACCGCTCTACGACGAGAATTAG
Protein sequence:
MADFLDSEAESEVESEEDEKPTERKKPKRKAAVQSDDEDEEEEDDEERLREELKDLIDDA
PIEESGSDGEDSDASVGPKKRKKSDDELDDRLEDEDYDLIEENLGVKVARNKFKRLRRLE
DDDSDNEGADDPDLEREVIAEKLFVGGSDEEDENRSESAAPREIEYDDENEDMESDADDF
IVDDDGRPIAERKKKRKPIFTDASLQEGQDIFGVDFDYDEFEKYGEEDYEDEDDEDLDEY
IEDEEEEGGERRRTKKGKAKRPSKKSIFEIYEPSELKRSHFTDLDNEIRKTDVPERMQIR
EVPITPVEEGSTELEDEAEWIYKQAFLKAPVSKADSQEARERTRRTGGTVIKIRQALDFM
RNQTLEVPFIAFYRKEYVQPELSINDLWKVYKYDAKWCQLKQRKENLLRLIENMREFQLD
KVMADPDAPIPDTMRLIKDEDIDRLKNIQTPEELRDVHTHFLLYYSHDLPEMQKVQRSKE
RKKELEEKNTGGTVIKIRQALDFMRNQTLEVPFIAFYRKEYVQPELSINDLWKVYKYDAK
WCQLKQRKENLLRLIENMREFQLDKVMADPDAPIPDTMRLIKDEDIDRLKNIQTPEELRD
VHTHFLLYYSHDLPEMQKVQRSKERKKELEEKKKLAREEAEKNGEDPEEAAAAVVAAEPD
DEEATEVKYAVRSGPYELCRKAGIEPLVKKFGLSPEQFAENVRDNYQRHEVEQQPVPPLE
AAAEYVSPGGSCSEVVRRAVYMCGVQLAREPLLRATLRDALRERATVTTKPTPRGLKEID
EGHPCYSMKYLKKKPVRDLTGDQFLRLTIAADDKLLELTISEQIEGNTSPSYLEELKQLY
QKDEFAATVQAWNELRAQAVTLALTKIVIPELRRELHAVLLQEAKDYVLKCCRRRLYDWL
KVAPYESRVSDEDDEEWDSSNGLRVMSIAYVPERTQCAFATVVAAAGEVVDHLRLPHLLL
RRNAWDAAERRNKEADMTSLRRFIQRKKPHVIVIGGESREALSVKADVAECVAQLVDDEQ
FPRIPVEIADNTISKIYSNSIRGRNDFREYPETLRQAICQARLLQDPLMEISQLCGPDEE
ILCLRYHPLQDQLPKEDLLEGIELEFVNRINEVGVDVNEAVLTGRGTELLQFVCGLGPRK
AQALIKLFKQTNQKLENRTQLVTVCHMGPKVFINCSGFIRIDTSSLGDSTEAYIEVLDGS
RVHPETYEWARKMAVDALEYEDEDANPAGALEEILEAPERLKDLDLDAFAEELERQGFGN
KSITLYDIRAELNSRYKDLRVAYRSPTPEELFDMLTKETPETLYVGKMVLATVIGISHRK
PQREMLDQANPVRNDETGLWECPFCHKNDFPELSEVWNHFDAGACPGQATGVRVRLDNGL
SGYIHIKNLSDRHVTDPTERVRIGQTIHCRILKIDVERFSVDCSSKSSDLLDKNNEWRPP
KDPYYDQESEDKDVRKDTETKQTKERMQYVKRVIVHPAFHNISFAEAEKLMENMAQGEVI
VRPSSKGSDHLTVTWKVADGICQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARYV
TPMAGHARDLIAYKYYKNLGGMRDKAEEILKDEKSKNPNKIHYPDFLTPAIPRHKPQPSV
YTEPSDWQKAAEDWVRHRARDESTSTPRHATRTPRHDARATPRHDSRGTPRHDSRGTPRH
DARSSVHSTPHSTPHATPHGHTSSGRSSRSHSARSTPHTNTSPRSMSLGDATPLYDEN