| New model in OGS2.0 | DPOGS203610 |
|---|---|
| Genomic Position | scaffold178:- 2541-28328 |
| See gene structure | |
| CDS Length | 2340 |
| Paired RNAseq reads | 89 |
| Single RNAseq reads | 252 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007277 (0.0) |
| Best Drosophila hit | rhomboid-5 (3e-106) |
| Best Human hit | rhomboid family member 2 isoform 1 (1e-105) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC006551 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC006551 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0016021 integral to membrane GO:0004252 serine-type endopeptidase activity GO:0008150 biological_process GO:0005794 Golgi apparatus GO:0016020 membrane GO:0005783 endoplasmic reticulum |
| InterPro families | IPR002610 Peptidase S54, rhomboid IPR022764 Peptidase S54, rhomboid domain |
| Orthology group | MCL10842 |
Nucleotide sequence:
ATGTTTCCGTCACCTAGTTGGCGATCTAGTGCTGGGCTGCTGGCCTCCCAACTCACTTGC
CAGAGTTCACCTGGACCACCTCCTTCAGCACCCCCAATCCCCCAACCAACCTCCCCTCCT
CGAATCGTCTCAGCACCCCCACCCCCAGAACCTCAACTACCTGAAGAAGAAGGGGTGAAA
TTAAGACGGGCTCATACAGTAGCTGTTAGAGATTATTTGAAAAGAGAGACACAGACATTT
TTTGGTGTTCAAAGAGATAATGAAAGAGAACAGAGAAGGCTATGGTATGAAAGGAGGAGA
AGACATGCAGCGAGAGCACTTGGAGACCTCAGGCTGGACCTACCCCCAGATCATCATCCT
GATCATGACGACATTAGTATGTATGGAGCATCTGGTGCAGCGCCAAGAGAGGCTCGGGGG
CACCGTGAGCGACCCGACGTGCTGCCAGCGCCGGCGTCGCTCGATACTAATCAACCAGTT
CCCCGCCTCGGCAAGGACAGCGTGGCCCGGCTTACTCTCACAGGACTATCCTACGTCGTT
ACTGCGGTGACGCGTCGTTCTCGTCAGTCTACCTCTGTCCAATGGTCCCGGTCTTTTCGT
GGCAGTGCCAGTAGTCCGCACGAAGAAATAGAAATTGATGACGTCTTCTTCGCCCCACAA
GCGATGACGTCACTCAGCCAGCATCACGAAGACATAGACGTCGTAGACGGAAGTAAAGGG
GCCAGGTCTCCTCTGAGGACGTCCTCGAGTGTGGAGTACAGGAGGCCTGAGAGGAATGTT
CAGTGGGGAACAGGCGGGATCCGCATCCACGCTCCTATGCTGGAACCCTTGGCAGATAAC
TCTAATAGAAGGCAATTTGGAATGGGCATTGTTGGTAGATTCTTTAGGAGGTCATTACGA
AAATCAGTGACGCATCAAGAAGATGTGGCTAGACAGTTGGACGAATTAACGGATTACAGG
CCTTACTTCACTTGGTGGGTCAGCACGGTACAAACATTAGTGCTGTTGCTGTCATTACTT
TGCTATGGCTTCGGACCAGTCGGTTTTGGACGACACACGCATTCAGGGCAGGTGCTGGTG
AAGAGTTTAAGCTTACAACAGGTCGAATGGGAGGAACCGGCTTCTTTCTGGCTAGGTCCT
CGAGCAGCTGATCTTATACATTTAGGTGCAAAGTTCGCACCATGCATGCGAAGGGATGTG
AGGATAGCACGGGCTATAGCTGCATCAGCTCGAAGGGAAAGAGACACGGCTTGCTGCATA
AGAAACGACGATTCTGGATGCGTACAGTCTTCTAAAGCCGATTGTTCCAATACAATATCG
ACGTGGAAGAAATGGTCATCCGGGGAATCTGGTCCTGGTGGTAGAATATCAGGATCGGTG
TGCGGTTTGGATCCAAAATTCTGTGAGGCGCCGCGTTCCATCGCTCCACACGAATGGCCG
GACGACATAACAAAATGGCCAATATGCAGGAAGTCAGTAATTGATGGATCAGCTGCTGCA
GGGCGAGCTGGACACGCGGCGGAGCACATGGCCTGTGAGGTTATAGGTCATCCATGCTGT
ATAGGAGTTCACGGACAGTGCGTCATCACCACCAGAGAGCATTGCGATTTTGTTAAAGGC
TACTTCCACGAGGAAGCTTCTTTGTGTTCACAAGTATCATGTTTGGACGACGTATGTGGA
ATGTTACCATTCATGCGGCGGAGACGTCCAGATCAGTTATACAGAGCCTGGACATCACTG
TTTGTGCATGCGGGACTATTACACTTGGCGGCCTCGTTAGCACTCCAGTGGCTCTTTATG
CGAGATCTGGAAAAGATGGCTGGACCTGTCAGGATGGCGGTGATATATCTTGGCAGTGGT
GTTGCAGGAAATATGGCTTCAGCTATTTTTGAACCGTATAGAGCAGAGGTTGGTCCAGCA
GGCTCACATTTTGGTCTACTCGCGTGCTTAATAGTGGAAGTGATAGGAGCGTGGCCGCTT
TTAAGGCACCCTCGGCGAGCTCTTCTCAAGCTTATAGGACTTGCGTTAGCACTTTTCCTC
CTAGGCCTTCTGCCTTGGATTGACAACTTTGCCCATGTGTTCGGATTTGTCTTTGGTTTT
TTGCTTTCATACGCGCTGCTGCCCTTCATAACATTCGGACCGTACGAGAGACGGCGGAAA
ATAGTTTTGGTGTGGGTGTGTATGGTGTCAGCCGGTGCCATGTTATGTGCTCTAATAGCG
TTGTTCTACGCGGCTCCGGCATATGAGTGCGCTGCATGTGCGTACTTTACGTGCCTGCCC
TTCGCCCCGGATATGTGCGCGTCACAGGACGTCCGCGTACGGCAGCTGGACGGGGTATGA
Protein sequence:
MFPSPSWRSSAGLLASQLTCQSSPGPPPSAPPIPQPTSPPRIVSAPPPPEPQLPEEEGVK
LRRAHTVAVRDYLKRETQTFFGVQRDNEREQRRLWYERRRRHAARALGDLRLDLPPDHHP
DHDDISMYGASGAAPREARGHRERPDVLPAPASLDTNQPVPRLGKDSVARLTLTGLSYVV
TAVTRRSRQSTSVQWSRSFRGSASSPHEEIEIDDVFFAPQAMTSLSQHHEDIDVVDGSKG
ARSPLRTSSSVEYRRPERNVQWGTGGIRIHAPMLEPLADNSNRRQFGMGIVGRFFRRSLR
KSVTHQEDVARQLDELTDYRPYFTWWVSTVQTLVLLLSLLCYGFGPVGFGRHTHSGQVLV
KSLSLQQVEWEEPASFWLGPRAADLIHLGAKFAPCMRRDVRIARAIAASARRERDTACCI
RNDDSGCVQSSKADCSNTISTWKKWSSGESGPGGRISGSVCGLDPKFCEAPRSIAPHEWP
DDITKWPICRKSVIDGSAAAGRAGHAAEHMACEVIGHPCCIGVHGQCVITTREHCDFVKG
YFHEEASLCSQVSCLDDVCGMLPFMRRRRPDQLYRAWTSLFVHAGLLHLAASLALQWLFM
RDLEKMAGPVRMAVIYLGSGVAGNMASAIFEPYRAEVGPAGSHFGLLACLIVEVIGAWPL
LRHPRRALLKLIGLALALFLLGLLPWIDNFAHVFGFVFGFLLSYALLPFITFGPYERRRK
IVLVWVCMVSAGAMLCALIALFYAAPAYECAACAYFTCLPFAPDMCASQDVRVRQLDGV