| New model in OGS2.0 | DPOGS211029 |
|---|---|
| Genomic Position | scaffold226:- 73316-74638 |
| See gene structure | |
| CDS Length | 1323 |
| Paired RNAseq reads | 1262 |
| Single RNAseq reads | 3132 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006243 (0.0) |
| Best Drosophila hit | vacuolar protein sorting 4 (2e-180) |
| Best Human hit | vacuolar protein sorting-associated protein 4A (8e-172) |
| Best NR hit (blastp) | vacuolar protein sorting 4 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | vacuolar protein sorting 4 [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0006886 intracellular protein transport GO:0016887 ATPase activity GO:0005524 ATP binding GO:0006911 phagocytosis, engulfment GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity GO:0030036 actin cytoskeleton organization |
| InterPro families | IPR003960 ATPase, AAA-type, conserved site IPR003959 ATPase, AAA-type, core IPR015415 Vps4 oligomerisation, C-terminal IPR007330 MIT IPR003593 ATPase, AAA+ type, core |
| Orthology group | MCL11672 |
Nucleotide sequence:
ATGGCTTCATCTAATACATTACAAAAAGCTATTGATCTTGTCACTAAAGCAACTGAAGAG
GATAAAAACAAAAATTATGAAGAAGCCCTACGACTTTACGAACATGGCGTAGAATATTTT
TTGCATGCAGTTAAATACGAAGCGCAAGGGGAGAGAGCTAAAGAAAGCATTAGAGCAAAA
TGCTTGCAATATTTAGATAGAGCTGAAAAACTTAAGGAGTATCTCAAAAAGGATCGTAAG
AAGAAACCAGTTAAGGATGGGGAATCAAACTCTAAGAGTGAAGATAAAAAGAGTGATAGC
GACAGTGATTCTGATGACCCAGAAAAGAAAAAGCTGCAGGGAAAATTGGAGGGAGCAATT
GTGGTTGAGAAACCCCATGTGAAGTGGAGTGATGTAGCTGGACTTGAAGCTGCTAAGGAA
GCTCTGAAAGAGGCTGTCATTCTACCAATTAAATTCCCACATTTATTTACTGGCAAAAGA
ATCCCATGGAAGGGAATATTGCTTTTTGGCCCACCCGGTACTGGTAAATCTTACTTAGCC
AAAGCTGTTGCTACTGAAGCAAATAATTCTACATTTTTTTCTGTTTCCTCATCTGACCTT
GTATCTAAATGGCTTGGAGAATCAGAGAAATTAGTGAAAAATCTGTTTGAGTTGGCAAGA
CAGCATAAGCCAAGTATAATATTCATTGATGAAATTGACTCCCTTTGCTCATCCCGGTCG
GACAATGAATCTGAATCAGCTAGAAGGATCAAAACTGAGTTTTTAGTACAGATGCAAGGT
GTTGGTAATGACATGGATGGTATCTTAGTACTTGGAGCTACTAATATTCCTTGGGTTCTG
GATTCTGCTATTAGGAGGAGATTTGAGAAACGTATTTATATAGCTCTCCCTGAAGAACAT
GCTCGTTTAGATATGTTTAAACTGCATCTAGGTAACACTCGACATATATTGACAGAACAA
GATATGAAAACGTTAGCTACAAAATCTGATGGATACTCAGGTGCTGACATTAGTATTGTT
GTTCGTGATGCTTTGATGCAGCCTGTGCGAAAAGTCCAGTCTTCAACACACTTTAAGAAA
GTTTCTGGACCTAGCCCCACTGACCCTAATGTGATTGTGAATGATCTTTTAACCCCTTGT
TCACCAGGAGATGCTGGAGCTATGGAAATGACCTGGATGGATGTACCAAGTGACAAACTT
GCTGAACCGCCTGTAACTATGTCAGACATGCTTAGATCCCTTGCAACATCTAAACCTACT
GTCAATGATGATGACATGATTAAATTGAAGAAGTTCATGGAAGATTTTGGCCAGGAAGGA
TAA
Protein sequence:
MASSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAK
CLQYLDRAEKLKEYLKKDRKKKPVKDGESNSKSEDKKSDSDSDSDDPEKKKLQGKLEGAI
VVEKPHVKWSDVAGLEAAKEALKEAVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLA
KAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSLCSSRS
DNESESARRIKTEFLVQMQGVGNDMDGILVLGATNIPWVLDSAIRRRFEKRIYIALPEEH
ARLDMFKLHLGNTRHILTEQDMKTLATKSDGYSGADISIVVRDALMQPVRKVQSSTHFKK
VSGPSPTDPNVIVNDLLTPCSPGDAGAMEMTWMDVPSDKLAEPPVTMSDMLRSLATSKPT
VNDDDMIKLKKFMEDFGQEG