New model in OGS2.0 | DPOGS206602  |
---|---|
Genomic Position | scaffold775:- 15622-23734 |
See gene structure | |
CDS Length | 2562 |
Paired RNAseq reads   | 25190 |
Single RNAseq reads   | 62797 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012171 (5e-74) |
Best Drosophila hit   | alpha actinin, isoform C (0.0) |
Best Human hit | alpha-actinin-1 isoform b (0.0) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC007894 [Tribolium castaneum] (0.0) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC007894 [Tribolium castaneum] (0.0) |
GeneOntology terms    | GO:0007629 flight behavior GO:0051017 actin filament bundle assembly GO:0051015 actin filament binding GO:0005509 calcium ion binding GO:0003779 actin binding GO:0005925 focal adhesion GO:0007016 cytoskeletal anchoring at plasma membrane GO:0031532 actin cytoskeleton reorganization GO:0030018 Z disc |
InterPro families    | IPR001715 Calponin homology domain IPR018247 EF-Hand 1, calcium-binding site IPR001589 Actinin-type, actin-binding, conserved site IPR011992 EF-hand-like domain IPR018249 EF-HAND 2 IPR002017 Spectrin repeat IPR014837 EF-hand, Ca insensitive IPR018159 Spectrin/alpha-actinin IPR002048 Calcium-binding EF-hand |
Orthology group | MCL10746 |
Nucleotide sequence:
ATGCTGTTGCTTGAAGTCATTTCAGGAGAGACCCTACCCAAGCCTGACCGCGGCAAAATG
CGTTTCCACAAGATCGCTAATGTCAACAAGGCTCTAGACTTCATTGCCTCAAAAGGTGTG
AAGTTGGTCTCCATCGGTGCTGAGGAAATTGTGGATGGCAACCTTAAGATGACCCTTGGT
ATGATTTGGACCATCATCTTGAGATTCGCAATTCAAGACATCTCAGTCGAAGAAATGACC
GCAAAGGAAGGTCTACTTCTGTGGTGTCAACGAAAGACAGCGCCTTACAAGAATGTAAAC
GTGCAGAACTTCCATCTGTCCTTCAAGGACGGTCTCGCGTTCTGTGCTCTGATTCACAGG
CACAGACCAGATCTGATCGACTACAGCAAGCTGTCCAAAGACAATCCCTTGGAGAACTTG
AACACCGCCTTCGATGTCGCGGAGAAATATCTAGACATCCCTCGCATGTTGGACCCCGAC
GACCTTATAAACACGCCCAAGCCCGACGAACGCGCCATTATGACCTATGTGTCATGTTAC
TACCACGCGTTCCAAGGCGCGCAACAGAACACGGCCATGCCGGACGAGCGAGCCGTCATG
ACCTACGTCTCGTCTTACTACCATTGCTTCTCTGGCGCTCAGAAGGCTGAAACTGCCGCA
AATCGCATCTGCAAAGTTCTCAAAGTCAACCAAGAGAACGAACGCCTCATGGAAGAGTAC
GAACGTCTGGCTAGTGATCTACTGGACTGGATCCGACGCACTATGCCTTGGCTGAACAGC
CGCCAAACCGACAACTCCCTCGCCGGCTGTCAGAAGAAACTGGAGGATTACCGTACTTAC
AGGCGTAAGCACAAGCCACCACGTGTAGAACAGAAAGCCAAGTTGGAGACTAACTTCAAC
ACGCTGCAGACGAAACTACGTCTCAGCAATCGCCCCGCCTACATGCCCACCGAGGGCAAA
ATGGTTTCTGACATCGCCCAAGCTTGGAAGGGTCTCGAGATAGCGGAGAAGGCCTTCGAA
GAATGGCTGCTCTCCGAGATGATGAGACTCGAGAGGCTCGAGTATCTGGCTCAGAAGTTC
AAGCACAAGGCTGACATACACGAGGACTGGACAAGAGGCAAGGAAGAGATGCTTCAGTCC
CAGGACTTCAGGCAGTGCAAGTTGTATGACATCAAAGCGCTGAAGAAGAAGCACGAGGCC
TTCGAGAGCGATCTGGCGGCCCACCAGGACCGCGTCGAACAGATTGCAGCCATCGCTCAG
GAGTTGAACACTCTGGAGTACCACGAGGTTGGCGCGGTGAACGCTCGCTGCCAGCGCATC
TGCTCCCAATGGGACCGCCTCGGAGCCCTGACTCAGCGCCGTCGCGCCGCCCTGGACGAC
GCCGAACGCCTGCTCGAACAAATCGACCTCCTGCATCTCGAGTTCGCAAAGAGAGCCGCG
CCCTTCAACAACTGGTTGGACGGAACTCGCGAGGACTTGGTCGACATGTTCATCGTGCAC
ACCATCGAAGAGATCTCCGGTTTGATGGACGCCCACGCGCGGTTCAAGGCGACCCTCGGA
GAAGCGGACAAGGAGTACCAGGCCATCGTCAATCTCGTCCACCAGGTGGAGTCCATCGTC
AAGCAACACCAGATACCTGGAGGATTGGAGAACCCATACACCACGCTCACCGCTCATGAG
TTGAACCGCAAGTGGTCCGACGTGCGGCAGTTGGTGCCGCAGCGGGACAGCACTCTAGCG
GCAGAGCTCCGTAAGCAGCAGAACAACGAGACGCTCAGGAGACAGTTCGCGGAGAAAGCC
AACGCTGTTGGACCCTGGATCGAGAGGCAGATGGACGCCGTCACCGCCATCGGCATGGGA
CTACAGGGCTCTTTGGAAGACCAATTACATCGGCTGAAGGAGTACGAGGCGGGAGTGTAC
GCTTACAAACCGCACATCGAAGAACTCGAGCGCATCCATCAAGCCGTGCAAGAGGGCATG
ATATTTGAGAACAGATATTCACAATACACTATGGAGACTCTTCGTGTGGGCTGGGAGCAG
CTCTTGACTTCCATCAACCGCACCATCAATGAAGTGGAGAACCAGATCCTCACCCGCGAC
TCGAAGGGCATCACCCAGGAACAACTCACTGAATTCCGCGCATCATTCAACCACTTCGAC
AAAAACCGCACTGGTCGTCTGGCTCCTGAAGAACTCAAGTCTTGCCTCGTGTCACTCGGA
TACAGCATCGGTAAAGACAGGCAAGGGGAACTGGACTTCCAACGCATTCTTGCTGTCGTC
GACCCTAACAACACTGGCTACGTCTCGTTCGATGCCTTCTTGGACTTCATGACCAGAGAA
TCAACTGACACCGACACTGCCGAACAGGTTATTGACAGCTTCAGGATCTTAGCCGGTGAC
AAGCCGTATATAACCGCGGACGAGTTGCGTCGTGAGCTGCCTCCCGACCAGGCGGAGTAC
TGCGTGGCTCGCATGCCGCCATACCGTGGACCGAACGCTCCGCCACACGCACTCGACTAC
ATGGCCTTCTCCACCGCACTCTACGGGGAGACTGACCTCTAA
Protein sequence:
MLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLG
MIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHR
HRPDLIDYSKLSKDNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCY
YHAFQGAQQNTAMPDERAVMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEY
ERLASDLLDWIRRTMPWLNSRQTDNSLAGCQKKLEDYRTYRRKHKPPRVEQKAKLETNFN
TLQTKLRLSNRPAYMPTEGKMVSDIAQAWKGLEIAEKAFEEWLLSEMMRLERLEYLAQKF
KHKADIHEDWTRGKEEMLQSQDFRQCKLYDIKALKKKHEAFESDLAAHQDRVEQIAAIAQ
ELNTLEYHEVGAVNARCQRICSQWDRLGALTQRRRAALDDAERLLEQIDLLHLEFAKRAA
PFNNWLDGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLVHQVESIV
KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRDSTLAAELRKQQNNETLRRQFAEKA
NAVGPWIERQMDAVTAIGMGLQGSLEDQLHRLKEYEAGVYAYKPHIEELERIHQAVQEGM
IFENRYSQYTMETLRVGWEQLLTSINRTINEVENQILTRDSKGITQEQLTEFRASFNHFD
KNRTGRLAPEELKSCLVSLGYSIGKDRQGELDFQRILAVVDPNNTGYVSFDAFLDFMTRE
STDTDTAEQVIDSFRILAGDKPYITADELRRELPPDQAEYCVARMPPYRGPNAPPHALDY
MAFSTALYGETDL