| New model in OGS2.0 | DPOGS206622 |
|---|---|
| Genomic Position | scaffold551:+ 106222-109361 |
| See gene structure | |
| CDS Length | 1248 |
| Paired RNAseq reads | 3279 |
| Single RNAseq reads | 9433 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004908 (1e-98) |
| Best Drosophila hit | Rpt3 (0.0) |
| Best Human hit | 26S protease regulatory subunit 6B isoform 1 (0.0) |
| Best NR hit (blastp) | 26S protease regulatory subunit 6B [Bombyx mori] (0.0) |
| Best NR hit (blastx) | 26S protease regulatory subunit 6B [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0008540 proteasome regulatory particle, base subcomplex GO:0016887 ATPase activity GO:0004175 endopeptidase activity GO:0006508 proteolysis GO:0005838 proteasome regulatory particle GO:0001673 male germ cell nucleus GO:0030163 protein catabolic process GO:0005737 cytoplasm GO:0005524 ATP binding GO:0006974 response to DNA damage stimulus |
| InterPro families | IPR003593 ATPase, AAA+ type, core IPR005937 26S proteasome subunit P45 IPR003959 ATPase, AAA-type, core IPR003960 ATPase, AAA-type, conserved site IPR001270 Chaperonin ClpA/B |
| Orthology group | MCL12040 |
Nucleotide sequence:
ATGGAAGAAATTGGTATTATTCTCCCAGAAAAGGATGACCAAGTCACCGACACAAAAGGC
CTATCATTTGCAGGTCCACAATCTTTTGACGAATTGGAATCTGAAGATCTGTACACAAAA
TACAAGAAATTACAACGAATGTTAGAGTTTCTCGAAGTACAAGAAGATTACATAAAAGAT
GAACAAAGAAATTTAAAGAAGGAATATTTGCATGCCCAAGAAGAGGTAAAAAGGATTCAG
TCTGTACCTCTGGTCATAGGACAGTTCCTCGAAGCAGTTGATCAAAATACTGGAATTGTT
GGTAGCACAACAGGATCAAATTATTATGTGCGAATCCTGTCTACAATAGACCGAGAGCTT
CTAAAGCCATCTGCCTCCGTCGCTCTACATAAGCACTCCAATGCTCTTGTAGATGTGCTT
CCACCAGAAGCTGATAGTTCCATATCTATGTTACAAGCTGACGAAAAGCCAGATGTTCAG
TACTCAGATATCGGAGGAATGGATACACAGAAACAGGAAATCAGAGAGGCTGTTGAACTG
CCTTTGACACATGTGGAACTTTACCGACAGATCGGTATTGAACCCCCTCGTGGTGTACTC
ATGTACGGACCTCCGGGTTGCGGCAAAACTATGTTGGCCAAAGCTGTTGCTCATCATACA
ACTGCTGCTTTCATTCGTGTTGTGGGGTCTGAGTTCGTGCAGAAGTACCTCGGCGAAGGT
CCACGGATGGTTCGTGATGTGTTCCGTCTCGCCAAAGAAAATAGTCCAGCTATCATATTT
ATAGATGAGATTGACGCTATCGCCACCAAAAGATTTGATGCCCAAACCGGTGCTGACAGA
GAAGTTCAAAGAATTTTGCTTGAGCTGCTCAACCAGATGGATGGGTTCGATCAAACCACT
AATGTTAAAGTAATTATGGCAACAAATCGAGCCGACACCTTGGATCCTGCTCTACTGAGA
CCTGGTCGTCTTGATAGAAAAATTGAATTCCCACTCCCTGACAGACGTCAGAAGCGTTTG
ATCTTCTCGACTATCACGGCCAAGATGAACTTATCCGAGGAAGTGGATCTTGAGGAATTC
GTAGCTCGACCTGAACGTGTATCCGGTGCTGATATTAACGCCATCTGTCAGGAAGCCGGA
ATGCACGCCGTTAGAGAAAATAGATACATCGTCCTTCCTAAGGACTTCGAAAAAGGTTAC
AAGAACAACATCAAGAAGGATGAATGTGAATATGAATTCTATAAATAA
Protein sequence:
MEEIGIILPEKDDQVTDTKGLSFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEDYIKD
EQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDREL
LKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVEL
PLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEG
PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTT
NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEF
VARPERVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKDECEYEFYK