| New model in OGS2.0 | DPOGS206046 |
|---|---|
| Genomic Position | scaffold4:- 331454-341674 |
| See gene structure | |
| CDS Length | 1809 |
| Paired RNAseq reads | 389 |
| Single RNAseq reads | 1276 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003472 (1e-29) |
| Best Drosophila hit | clock, isoform A (7e-117) |
| Best Human hit | circadian locomoter output cycles protein kaput (4e-106) |
| Best NR hit (blastp) | clock [Danaus plexippus] (0.0) |
| Best NR hit (blastx) | clock [Danaus plexippus] (0.0) |
| GeneOntology terms | GO:0003677 DNA binding GO:0007623 circadian rhythm GO:0045893 positive regulation of transcription, DNA-dependent GO:0003702 RNA polymerase II transcription factor activity GO:0005634 nucleus GO:0048148 behavioral response to cocaine GO:0045475 locomotor rhythm GO:0008062 eclosion rhythm GO:0045187 regulation of circadian sleep/wake cycle, sleep GO:0007622 rhythmic behavior GO:0045944 positive regulation of transcription from RNA polymerase II promoter GO:0007165 signal transduction GO:0003700 sequence-specific DNA binding transcription factor activity GO:0004871 signal transducer activity GO:0046982 protein heterodimerization activity GO:0000122 negative regulation of transcription from RNA polymerase II promoter GO:0005515 protein binding GO:0032922 circadian regulation of gene expression |
| InterPro families | IPR011598 Helix-loop-helix DNA-binding IPR001067 Nuclear translocator IPR001092 Helix-loop-helix DNA-binding domain IPR000014 PAS IPR001610 PAC motif IPR013655 PAS fold-3 IPR013767 PAS fold |
| Orthology group | MCL11716 |
Nucleotide sequence:
ATGGATGACGACGGGGATGATAAAGATGACACCAAAAGGAGAACTCGCAATCTTAGTGAG
AAGAAGAGGAGAGACCAGTTCAACATGCTTGTCAATGAACTCGGTTCTATGGTATCAACA
AATAATAGAAAAATGGATAAATCAACTGTTCTTAAGTCTACTATATCATTCTTAAAGAAC
CATAATGAGATAACAGTGCGATCACGAGCTCATGATGTCCAAGAAGATTGGAAGCCGGCT
TTCTTATCTAATGAGGAATTCACCTACTTAGTCTTGGAGGCCTTGGAGGGTTTTGTTATG
GTATTTTCAGCTAGCGGTTGCATTTACTATGTATCGGAAAGTGTGACATCTTTGCTAGGG
CATACTCCGGGAGACATTATCAATAAAAGTATATTTGATTTGGCATTTGTTGATGATCGT
CCAAATCTATACAACATTTTGCAAAATGGCGGTACCCTCGATCCGACCCAAGTTGTGACG
ACAGATAATCCTATAAGCTTCCGTTGCCGCCTGCAAAGGGGAACATTAGATTTCAGAGAT
GAAGTAACCTACGAATTGGTCCAATTCGATGGCCACTTCCGTAAAAATCTGGAGTCGAAT
GAGAACGGCCATCATTCGTATCAGGATGAACACGAATCGAGATTACTATTCGTGTGCACC
GGCAGGCTGTATATGCCACAGCTAGTTCGCGACGTGTCTCTCGTTGATACTATTCGTAGC
GAGTTCACATCGCGCCACAGCCTGGAGTGGAAGTTTTTGTTCTTGGACCACCGCGCCCCT
CCCATCATAGGATACTTGCCATTCGAAGTCCTAGGCACATCAGGATACGATTACTACCAT
TTTGATGATCTAGAGAAGGTCGTGTCCTGTCACGAAGCCTTGATGCAAAAGGGCGAGCTG
ACTTCGTGCTACTATAGGTTTCTGACCAAGGGTCAACAGTGGATCTGGCTCCAGACACGT
TTTTATATAACATACCATCAGTGGAACTCTAAACCCGAATTCGTTGTTTGCACTCATCGA
GTCGTTAGTTATGCTGATATAATAAAAAGCACAAAACAGGAGCGTACAGAGACAGAGGAG
TCTGTTCGTGACTGCGATCATAACGGATCGTCTTTGAAGGATCCTTCCACTGAGGACGCT
ATGGTGCCCGTATCACCCTCATATATGTCAGAGGCAAGCGACGCCTTCGCCACCTCATAT
AATTCTATGTCCAAGCTGGCATCGGTGAAGTCTGCGGCCACATCAGGCAGTACAAGTGCG
ACGGTGGCCACACTTGGAACTGCCATCACCACAGCGAGTGCCACATGGCCACCACGATCG
TCCTATCTGCTGTACACCACTGGTTCTGACACCACTTCCGTATCCGGTGGATCTCGATCC
TCGCAGAGGAATAGCTCTCAGGAGTTGCAGAGGTTACCTGAACCGGCCCTGGTGCCGCAA
CACGGTATTGGTGCTCAGTATCTGGAGCCCGCCCCCTACGTGGGCGCTGTCGGCGTCCCC
GCTGTACTGCCGCTATCTCTACCACCCATACCGGTTATAGTCGCACAAGATCAGGCCCAG
TTACAGTTGCAGCGAACCCATCGTGAGCTGCAGCAGATGATCGTGAGGCAGCAGGAGGAG
CTGCGCCAGGTGAAGGAACAGCTGCTGTTCGCGAGGCTCGGTATACTGCAGCCGGTTATC
AACGTCCAGGATCCGTTCACGAATCCAGAGCAAATGCCGAACCGGTCGTCCATCATGTAC
GATGGTAACAGACAGCTAAGCTATCCGCAGACGAGCCACCAGCAAAATCACAACATGCCG
CCACAGTAA
Protein sequence:
MDDDGDDKDDTKRRTRNLSEKKRRDQFNMLVNELGSMVSTNNRKMDKSTVLKSTISFLKN
HNEITVRSRAHDVQEDWKPAFLSNEEFTYLVLEALEGFVMVFSASGCIYYVSESVTSLLG
HTPGDIINKSIFDLAFVDDRPNLYNILQNGGTLDPTQVVTTDNPISFRCRLQRGTLDFRD
EVTYELVQFDGHFRKNLESNENGHHSYQDEHESRLLFVCTGRLYMPQLVRDVSLVDTIRS
EFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVVSCHEALMQKGEL
TSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVVSYADIIKSTKQERTETEE
SVRDCDHNGSSLKDPSTEDAMVPVSPSYMSEASDAFATSYNSMSKLASVKSAATSGSTSA
TVATLGTAITTASATWPPRSSYLLYTTGSDTTSVSGGSRSSQRNSSQELQRLPEPALVPQ
HGIGAQYLEPAPYVGAVGVPAVLPLSLPPIPVIVAQDQAQLQLQRTHRELQQMIVRQQEE
LRQVKEQLLFARLGILQPVINVQDPFTNPEQMPNRSSIMYDGNRQLSYPQTSHQQNHNMP
PQ