| New model in OGS2.0 | DPOGS210978 |
|---|---|
| Genomic Position | scaffold262:- 134782-136504 |
| See gene structure | |
| CDS Length | 948 |
| Paired RNAseq reads | 5055 |
| Single RNAseq reads | 21116 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006405 (7e-103) |
| Best Drosophila hit | heterogeneous nuclear ribonucleoprotein at 98DE, isoform D (1e-69) |
| Best Human hit | heterogeneous nuclear ribonucleoprotein A1 isoform a (8e-54) |
| Best NR hit (blastp) | heterogeneous nuclear ribonucleoprotein A1 [Bombyx mori] (6e-84) |
| Best NR hit (blastx) | PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein at 87F CG12749-PB, isoform B [Apis mellifera] (2e-77) |
| GeneOntology terms | GO:0030529 ribonucleoprotein complex GO:0030530 heterogeneous nuclear ribonucleoprotein complex GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0043565 sequence-specific DNA binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0033119 negative regulation of RNA splicing GO:0005703 polytene chromosome puff |
| InterPro families | IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain |
| Orthology group | MCL10803 |
Nucleotide sequence:
ATGAGACCGCAAAACGGAGACGATGGCTTTGATGAGCCCGAGGTACATAGAAAAATTTTC
ATTGGAGGATTGAACTATAGGACCTCTGATGAATCCTTAAAAGCACATTTTGAAAAATGG
GGTGAAATTGTCGATGTTGTTGTTATGAAGGACCCTAAAACGAAAAGATCCAGAGGTTTC
GGATTTATCACGTATTCGAAAGCGCACATGGTCGATGATGCGCAACTTAATAGGCCACAT
CGTATAGATGGCCGTATGGTAGAAACTAAAAGAGCAGTAGCCAGACAAGATATCAAAAAC
CCGGAAGCTGGAGCTACGGTTAAAAAATTATTTATTGGTGGCATTAAAGACGATCATGAT
GAAGAACAACTTAGAGAATACTTTTCAAACTATGGAAATGTACAAAATGTCAGTATAGTT
ACTGATAAAGGAACCGGGAAAAAACGTGGCTTTGGCTTTGTTGAATTTGATGATTATGAT
CCAGTTGACAAAATTTGTTTGAATGCTCCCCACAAAATTAATGGTAAACAGTTAGATGTT
AAAAAAGCACTCCCCAAAGATGGTTCTGACCAAAGAGGAGGGCGAGGTGGTGGTGGTGGA
GGAAGAAATGACAACTGGGGCAATGGTGGAGGTTACGGAAACAACCAAGGAGGTTGGAAC
AACTCCAACCCATGGGACAACAACCAAGGAGGATGGGGTGGTAACCAGGGAGGTGGTGGT
TACGGTGGGGGTGGTGGCAATCAAAGAGGAGGGTGGGGGAATCAAGACTTTGGTAATTAC
AATCAACAGGGATACAGTGGTGGTCCAACGCGTAACCAGCAATATAGCAACAATAGGTCC
GCCCCTTATAACGTGAACCAAGGTGGTGGCGGCAGTGGCGGCGGCTACGGTGGCGGCAAC
TATGGCGGCGGTGGCGGCGGCAACCAAGGAAGAGGTGGAAGATTCTAA
Protein sequence:
MRPQNGDDGFDEPEVHRKIFIGGLNYRTSDESLKAHFEKWGEIVDVVVMKDPKTKRSRGF
GFITYSKAHMVDDAQLNRPHRIDGRMVETKRAVARQDIKNPEAGATVKKLFIGGIKDDHD
EEQLREYFSNYGNVQNVSIVTDKGTGKKRGFGFVEFDDYDPVDKICLNAPHKINGKQLDV
KKALPKDGSDQRGGRGGGGGGRNDNWGNGGGYGNNQGGWNNSNPWDNNQGGWGGNQGGGG
YGGGGGNQRGGWGNQDFGNYNQQGYSGGPTRNQQYSNNRSAPYNVNQGGGGSGGGYGGGN
YGGGGGGNQGRGGRF