New model in OGS2.0 | DPOGS203454  |
---|---|
Genomic Position | scaffold244:+ 42199-47732 |
See gene structure | |
CDS Length | 1992 |
Paired RNAseq reads   | 4050 |
Single RNAseq reads   | 9661 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011103 (9e-44) |
Best Drosophila hit   | Nnp-1 (4e-34) |
Best Human hit | ribosomal RNA processing protein 1 homolog B (8e-22) |
Best NR hit (blastp)   | PREDICTED: similar to AGAP002684-PA [Tribolium castaneum] (3e-58) |
Best NR hit (blastx)   | PREDICTED: similar to AGAP002684-PA [Tribolium castaneum] (7e-48) |
GeneOntology terms    | GO:0006364 rRNA processing GO:0005634 nucleus GO:0016072 rRNA metabolic process GO:0030688 preribosome, small subunit precursor GO:0000022 mitotic spindle elongation |
InterPro families   | IPR010301 Nucleolar, Nop52 |
Orthology group | MCL15447 |
Nucleotide sequence:
ATGAAACGACTGGAAAAGAAAAAGGTTAAAAATCCAAAACATAAAAAGAAATCTATAATA
AAACCTAAAAAAGAGAAAGTACTCGTTGTGGCGCAGGAATTTAAATTTGCGCGTCTGCTT
TCTGGAAACGAGAAAAAAACTAGAGATCGTGTTTTGAAAACATTGAAAAAATGGCTTTTG
AACTGTTTTGAGAAAGGATATGAGTTCAAGGAAGATGACTTCATCCGAGTATGGAAAGGT
TTATTTTATGCCGTGTGGATGTCTGACAAGCCTCTAGTACAGATCCTCGACCTGTTCCCT
GTGGAACAGATACACCATGCTATCCTGATGATGAAGGCGGGATTTAGAGTGTTAGCCACC
GAGTGGTACGGACTGGATCAACACAGGATGGATAAGTTCCTTATGCTGGTCCGACGCTAC
CTCCGCGGCGGCTGGCGCTGTCTGAGGAGAGCCGACTGGAGTCTGGACTCGTGTCACAGA
TTTGTTGACATGCTCACGGGACAGGACGGCCTGTTTGCTGTGAAGACTCCATCCTTTGCC
AGGAACTCCCTGTCCCTGATGCTGCATGTCATTGACTGCTACCTGGAGGAGTTGTCCAAG
GTATCCGAAGGTTCCATCCCCCTGGCCAGCATGGCGTGCCTCCTCCAGCCGTTCACGCTC
CACGTGAGGTGTGACACTCCGCTCAGTGTGCCGGCCAGGAGACTCCTCACGCAGCTCATC
ACACAGACCGACCTGGGCTTGGAGTACGAACAGAAGGCTCGGGCCTGGAAAAAGATGGGT
TGTCCCCCCGGAGGACCGGATGCCTTGGAGCTGGTGGAAGACGAGGATGATGAGGAACAT
GAGGATGACGAGCAGGAGGAGGTCCTGGAGGACGGGCCTGGGCCGCTGGACCCTCGCGCA
GGTCGTGTGAGCGTGCTGCTGACGCCGCTGCCAGTGCCGGGAGCCGAGCTAGCGGACCAG
CTGAGAGGAGCCGCGACCTCGCACCGTGCGAAGAGACGAGCAGAGATATGTGCTGAGAGG
TTCTTAGCTCTATCATCATCAGAATATCCCCTGAAGGTTCCCGAGGCGGACATCCCGGAG
GAGGTGCCTAAGGGCGTGTCCCCTGGCAAGGCAGCCAAGAGTCTGGTGAGGCTGGAGAGG
AGCCTCGGCGCCACCAAGGACGAACTAGCTCTCAAAGCAATGAGTAAAAAACATCGCAAG
AAGTTACTGGCGAAGGCGCGAGCTGGTCTCAGTATAGTGGAGGAAGTGACGACAGGATCC
AGGGACGGGGAGTGGCAAGTTGAAGAAGCGGAAGATACAGAACACACCAAGGACGAGGAC
AAAGAAAACCTGAAGAAGAAAAAGAATAGAAAAAGAAAGATGAAGAACGACCAAGAAGAC
GGAAACAAGAAACGGAGAGTGACCGGAGATGACGTCATAGAGACAAGTGAAAGCAACCAT
AAGAATAGTATCACAGAAATTAAGAAAAAGAAACGAGATAAAGCAAAGATAAAGACAAAA
AAAAATAATGAAAGAAAAGTCAGCGGAGGTGACGGAAGCAAGGCGGTGATCAGTATTAAG
CCAATAAATAAAGAAAATAATACAAAAACACAAAAAGATAGAATAGAAAACAAAGAGCGG
GCTGAGAGTGTAGCGAGTGATGAGAGGAAGAATGAAAAGATGAGTAAAGATAAGGAAAAG
AAACAGGAAAACAAGAGAAACGAGAAGGACAGTGAGAGAGTTACACCGAGTAAGGTCAAG
AACTATCAGAAGGCGACTCAAGCGAAGAAAGACAGTCCCAAGAAGGTGGTGACCTTCGAC
ACGCCCAAGAAGGTGAAGTTCGTGTTAAAGAAGAACAGTATGCAACTGCCCGGGGAGTAC
TACAGGAGCGTGCAGAGAAGCCCCGACATCCCTTACGACGGGACCAGGCAGCCCGCCAAG
ACCAACCTCAAGCCCTCCACGCCCTCACCCATCAACCCGTTCTTTAAGAAGTACAAGCTG
AAGATCAAGTGA
Protein sequence:
MKRLEKKKVKNPKHKKKSIIKPKKEKVLVVAQEFKFARLLSGNEKKTRDRVLKTLKKWLL
NCFEKGYEFKEDDFIRVWKGLFYAVWMSDKPLVQILDLFPVEQIHHAILMMKAGFRVLAT
EWYGLDQHRMDKFLMLVRRYLRGGWRCLRRADWSLDSCHRFVDMLTGQDGLFAVKTPSFA
RNSLSLMLHVIDCYLEELSKVSEGSIPLASMACLLQPFTLHVRCDTPLSVPARRLLTQLI
TQTDLGLEYEQKARAWKKMGCPPGGPDALELVEDEDDEEHEDDEQEEVLEDGPGPLDPRA
GRVSVLLTPLPVPGAELADQLRGAATSHRAKRRAEICAERFLALSSSEYPLKVPEADIPE
EVPKGVSPGKAAKSLVRLERSLGATKDELALKAMSKKHRKKLLAKARAGLSIVEEVTTGS
RDGEWQVEEAEDTEHTKDEDKENLKKKKNRKRKMKNDQEDGNKKRRVTGDDVIETSESNH
KNSITEIKKKKRDKAKIKTKKNNERKVSGGDGSKAVISIKPINKENNTKTQKDRIENKER
AESVASDERKNEKMSKDKEKKQENKRNEKDSERVTPSKVKNYQKATQAKKDSPKKVVTFD
TPKKVKFVLKKNSMQLPGEYYRSVQRSPDIPYDGTRQPAKTNLKPSTPSPINPFFKKYKL
KIK