| New model in OGS2.0 | DPOGS203454 |
|---|---|
| Genomic Position | scaffold244:+ 42199-47732 |
| See gene structure | |
| CDS Length | 1992 |
| Paired RNAseq reads | 4050 |
| Single RNAseq reads | 9661 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011103 (9e-44) |
| Best Drosophila hit | Nnp-1 (4e-34) |
| Best Human hit | ribosomal RNA processing protein 1 homolog B (8e-22) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP002684-PA [Tribolium castaneum] (3e-58) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP002684-PA [Tribolium castaneum] (7e-48) |
| GeneOntology terms | GO:0006364 rRNA processing GO:0005634 nucleus GO:0016072 rRNA metabolic process GO:0030688 preribosome, small subunit precursor GO:0000022 mitotic spindle elongation |
| InterPro families | IPR010301 Nucleolar, Nop52 |
| Orthology group | MCL15447 |
Nucleotide sequence:
ATGAAACGACTGGAAAAGAAAAAGGTTAAAAATCCAAAACATAAAAAGAAATCTATAATA
AAACCTAAAAAAGAGAAAGTACTCGTTGTGGCGCAGGAATTTAAATTTGCGCGTCTGCTT
TCTGGAAACGAGAAAAAAACTAGAGATCGTGTTTTGAAAACATTGAAAAAATGGCTTTTG
AACTGTTTTGAGAAAGGATATGAGTTCAAGGAAGATGACTTCATCCGAGTATGGAAAGGT
TTATTTTATGCCGTGTGGATGTCTGACAAGCCTCTAGTACAGATCCTCGACCTGTTCCCT
GTGGAACAGATACACCATGCTATCCTGATGATGAAGGCGGGATTTAGAGTGTTAGCCACC
GAGTGGTACGGACTGGATCAACACAGGATGGATAAGTTCCTTATGCTGGTCCGACGCTAC
CTCCGCGGCGGCTGGCGCTGTCTGAGGAGAGCCGACTGGAGTCTGGACTCGTGTCACAGA
TTTGTTGACATGCTCACGGGACAGGACGGCCTGTTTGCTGTGAAGACTCCATCCTTTGCC
AGGAACTCCCTGTCCCTGATGCTGCATGTCATTGACTGCTACCTGGAGGAGTTGTCCAAG
GTATCCGAAGGTTCCATCCCCCTGGCCAGCATGGCGTGCCTCCTCCAGCCGTTCACGCTC
CACGTGAGGTGTGACACTCCGCTCAGTGTGCCGGCCAGGAGACTCCTCACGCAGCTCATC
ACACAGACCGACCTGGGCTTGGAGTACGAACAGAAGGCTCGGGCCTGGAAAAAGATGGGT
TGTCCCCCCGGAGGACCGGATGCCTTGGAGCTGGTGGAAGACGAGGATGATGAGGAACAT
GAGGATGACGAGCAGGAGGAGGTCCTGGAGGACGGGCCTGGGCCGCTGGACCCTCGCGCA
GGTCGTGTGAGCGTGCTGCTGACGCCGCTGCCAGTGCCGGGAGCCGAGCTAGCGGACCAG
CTGAGAGGAGCCGCGACCTCGCACCGTGCGAAGAGACGAGCAGAGATATGTGCTGAGAGG
TTCTTAGCTCTATCATCATCAGAATATCCCCTGAAGGTTCCCGAGGCGGACATCCCGGAG
GAGGTGCCTAAGGGCGTGTCCCCTGGCAAGGCAGCCAAGAGTCTGGTGAGGCTGGAGAGG
AGCCTCGGCGCCACCAAGGACGAACTAGCTCTCAAAGCAATGAGTAAAAAACATCGCAAG
AAGTTACTGGCGAAGGCGCGAGCTGGTCTCAGTATAGTGGAGGAAGTGACGACAGGATCC
AGGGACGGGGAGTGGCAAGTTGAAGAAGCGGAAGATACAGAACACACCAAGGACGAGGAC
AAAGAAAACCTGAAGAAGAAAAAGAATAGAAAAAGAAAGATGAAGAACGACCAAGAAGAC
GGAAACAAGAAACGGAGAGTGACCGGAGATGACGTCATAGAGACAAGTGAAAGCAACCAT
AAGAATAGTATCACAGAAATTAAGAAAAAGAAACGAGATAAAGCAAAGATAAAGACAAAA
AAAAATAATGAAAGAAAAGTCAGCGGAGGTGACGGAAGCAAGGCGGTGATCAGTATTAAG
CCAATAAATAAAGAAAATAATACAAAAACACAAAAAGATAGAATAGAAAACAAAGAGCGG
GCTGAGAGTGTAGCGAGTGATGAGAGGAAGAATGAAAAGATGAGTAAAGATAAGGAAAAG
AAACAGGAAAACAAGAGAAACGAGAAGGACAGTGAGAGAGTTACACCGAGTAAGGTCAAG
AACTATCAGAAGGCGACTCAAGCGAAGAAAGACAGTCCCAAGAAGGTGGTGACCTTCGAC
ACGCCCAAGAAGGTGAAGTTCGTGTTAAAGAAGAACAGTATGCAACTGCCCGGGGAGTAC
TACAGGAGCGTGCAGAGAAGCCCCGACATCCCTTACGACGGGACCAGGCAGCCCGCCAAG
ACCAACCTCAAGCCCTCCACGCCCTCACCCATCAACCCGTTCTTTAAGAAGTACAAGCTG
AAGATCAAGTGA
Protein sequence:
MKRLEKKKVKNPKHKKKSIIKPKKEKVLVVAQEFKFARLLSGNEKKTRDRVLKTLKKWLL
NCFEKGYEFKEDDFIRVWKGLFYAVWMSDKPLVQILDLFPVEQIHHAILMMKAGFRVLAT
EWYGLDQHRMDKFLMLVRRYLRGGWRCLRRADWSLDSCHRFVDMLTGQDGLFAVKTPSFA
RNSLSLMLHVIDCYLEELSKVSEGSIPLASMACLLQPFTLHVRCDTPLSVPARRLLTQLI
TQTDLGLEYEQKARAWKKMGCPPGGPDALELVEDEDDEEHEDDEQEEVLEDGPGPLDPRA
GRVSVLLTPLPVPGAELADQLRGAATSHRAKRRAEICAERFLALSSSEYPLKVPEADIPE
EVPKGVSPGKAAKSLVRLERSLGATKDELALKAMSKKHRKKLLAKARAGLSIVEEVTTGS
RDGEWQVEEAEDTEHTKDEDKENLKKKKNRKRKMKNDQEDGNKKRRVTGDDVIETSESNH
KNSITEIKKKKRDKAKIKTKKNNERKVSGGDGSKAVISIKPINKENNTKTQKDRIENKER
AESVASDERKNEKMSKDKEKKQENKRNEKDSERVTPSKVKNYQKATQAKKDSPKKVVTFD
TPKKVKFVLKKNSMQLPGEYYRSVQRSPDIPYDGTRQPAKTNLKPSTPSPINPFFKKYKL
KIK