New model in OGS2.0 | DPOGS203665  |
---|---|
Genomic Position | scaffold184:+ 144003-146695 |
See gene structure | |
CDS Length | 1185 |
Paired RNAseq reads   | 489 |
Single RNAseq reads   | 1290 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003462 (2e-45) |
Best Drosophila hit   | Spf45, isoform A (1e-60) |
Best Human hit | splicing factor 45 (6e-38) |
Best NR hit (blastp)   | splicing factor 45 [Bombyx mori] (0.0) |
Best NR hit (blastx)   | splicing factor 45 [Bombyx mori] (2e-155) |
GeneOntology terms    | GO:0005681 spliceosomal complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0006281 DNA repair GO:0071011 precatalytic spliceosome |
InterPro families    | IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain IPR000467 D111/G-patch IPR016967 Splicing factor, SPF45 IPR003954 RNA recognition motif domain, eukaryote |
Orthology group | MCL14932 |
Nucleotide sequence:
ATGTCGTTATATGATGATCTTGATACTATAAAAGCCCGTACGTCTGATAAAGTCGCAGGA
TGGTCTTCGGGAATAAAACTTTTGCAATCTCAATTACAATTAAAAAAGGCTGCTGTAACA
CAACCAAAGAGAGAAGCTTTGCGAAGATCTAATCAGGTACTAACTCCTGTAATAGACTTG
AAAAGTAAGTCTAAGGATGATGACGAGCCTAACACGAATAGCCCAAAAATTCAACCAAAA
ACAATTACAGCTACTTTGAATGTTCGTGATTTTGATTGGAATGTTGCAAATGAATATGAT
CCTATGTGGCCTAATGATTATGAAAAAGTAGCCAAAGAAATGCAAGCTAAAAGGCTCAAC
CTAGATGGAAGCAATGAAAGAACAGAAAGGAGTGAGAGATCAGAAAGGAAACGTAAAACA
AGATTTAATGATGAAGAAGATGTTATACCAGAAAAAACATTAGTGCCAATGCAACCTGAA
GAGGAAGAAGTGGAAGAGAAAACCAAACGGACAGCAGGAGTTGCTATTGCACCGCCACCT
TCTTTGACTATAGAGAGTCTCTCACCCCCACCTGTCATACCAACTCCAACTGCAAGCCAA
GGTTTCTCACTTGGTGGCTATGGTGCTAGTTCGGTTGCAGCAAAAATAATGGCAAAATAT
GGTTTTAAAGAGGGTCAAGGTTTAGGCAAGAAAGAACAAGGAATGTCAGTAGCATTGCAG
GTTGAGAAAACCTCCAAGCGTGGCGGTCGCATTATTCACGAAAAGGACAGCACAAACATG
ATGCCACCTAGTTTTGCCATGACATCATATTCAGGACCGGACTCACCCAATGCTTCAAAT
TCACCACATTCAAGACAGGAACCGTCTATTACAGAAATAATGAAAACACCAAGTAAAGTG
GTTTTATTGAGGAATATGGTTGGACCAGGTGATGTTGATGAAGAACTTGAGCCGGAGGTC
AAAGATGAGTGCAACACCAAGTATGGTGAAGTAGTAAAAGTCCTGATCTTTGAAATGCCC
AATGCACCAAGTGATGAAGCTGTCAGAATATTTGTGGAATTCAAGAGGATTGAAAGTGCT
ATTAAAGCAGTTGTTGATTTGAATGGGAGATTTTTTGGTGGAAGACAGGTCAAGGCTGGC
TTTTATGATGTAGAAAAGTTTGCATCTTTGCAATTAAATGAATGA
Protein sequence:
MSLYDDLDTIKARTSDKVAGWSSGIKLLQSQLQLKKAAVTQPKREALRRSNQVLTPVIDL
KSKSKDDDEPNTNSPKIQPKTITATLNVRDFDWNVANEYDPMWPNDYEKVAKEMQAKRLN
LDGSNERTERSERSERKRKTRFNDEEDVIPEKTLVPMQPEEEEVEEKTKRTAGVAIAPPP
SLTIESLSPPPVIPTPTASQGFSLGGYGASSVAAKIMAKYGFKEGQGLGKKEQGMSVALQ
VEKTSKRGGRIIHEKDSTNMMPPSFAMTSYSGPDSPNASNSPHSRQEPSITEIMKTPSKV
VLLRNMVGPGDVDEELEPEVKDECNTKYGEVVKVLIFEMPNAPSDEAVRIFVEFKRIESA
IKAVVDLNGRFFGGRQVKAGFYDVEKFASLQLNE