DPGLEAN11047 in OGS1.0

New model in OGS2.0DPOGS203665 
Genomic Positionscaffold184:+ 144003-146695
See gene structure
CDS Length1185
Paired RNAseq reads  489
Single RNAseq reads  1290
Migratory profilesQuery via corresponding ESTs
Best Bmobyx hitBGIBMGA003462 (2e-45)
Best Drosophila hit  Spf45, isoform A (1e-60)
Best Human hitsplicing factor 45 (6e-38)
Best NR hit (blastp)  splicing factor 45 [Bombyx mori] (0.0)
Best NR hit (blastx)  splicing factor 45 [Bombyx mori] (2e-155)
GeneOntology terms





  
GO:0005681 spliceosomal complex
GO:0000398 nuclear mRNA splicing, via spliceosome
GO:0003676 nucleic acid binding
GO:0000166 nucleotide binding
GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome
GO:0006281 DNA repair
GO:0071011 precatalytic spliceosome
InterPro families



  
IPR012677 Nucleotide-binding, alpha-beta plait
IPR000504 RNA recognition motif domain
IPR000467 D111/G-patch
IPR016967 Splicing factor, SPF45
IPR003954 RNA recognition motif domain, eukaryote
Orthology groupMCL14932

Nucleotide sequence:

ATGTCGTTATATGATGATCTTGATACTATAAAAGCCCGTACGTCTGATAAAGTCGCAGGA
TGGTCTTCGGGAATAAAACTTTTGCAATCTCAATTACAATTAAAAAAGGCTGCTGTAACA
CAACCAAAGAGAGAAGCTTTGCGAAGATCTAATCAGGTACTAACTCCTGTAATAGACTTG
AAAAGTAAGTCTAAGGATGATGACGAGCCTAACACGAATAGCCCAAAAATTCAACCAAAA
ACAATTACAGCTACTTTGAATGTTCGTGATTTTGATTGGAATGTTGCAAATGAATATGAT
CCTATGTGGCCTAATGATTATGAAAAAGTAGCCAAAGAAATGCAAGCTAAAAGGCTCAAC
CTAGATGGAAGCAATGAAAGAACAGAAAGGAGTGAGAGATCAGAAAGGAAACGTAAAACA
AGATTTAATGATGAAGAAGATGTTATACCAGAAAAAACATTAGTGCCAATGCAACCTGAA
GAGGAAGAAGTGGAAGAGAAAACCAAACGGACAGCAGGAGTTGCTATTGCACCGCCACCT
TCTTTGACTATAGAGAGTCTCTCACCCCCACCTGTCATACCAACTCCAACTGCAAGCCAA
GGTTTCTCACTTGGTGGCTATGGTGCTAGTTCGGTTGCAGCAAAAATAATGGCAAAATAT
GGTTTTAAAGAGGGTCAAGGTTTAGGCAAGAAAGAACAAGGAATGTCAGTAGCATTGCAG
GTTGAGAAAACCTCCAAGCGTGGCGGTCGCATTATTCACGAAAAGGACAGCACAAACATG
ATGCCACCTAGTTTTGCCATGACATCATATTCAGGACCGGACTCACCCAATGCTTCAAAT
TCACCACATTCAAGACAGGAACCGTCTATTACAGAAATAATGAAAACACCAAGTAAAGTG
GTTTTATTGAGGAATATGGTTGGACCAGGTGATGTTGATGAAGAACTTGAGCCGGAGGTC
AAAGATGAGTGCAACACCAAGTATGGTGAAGTAGTAAAAGTCCTGATCTTTGAAATGCCC
AATGCACCAAGTGATGAAGCTGTCAGAATATTTGTGGAATTCAAGAGGATTGAAAGTGCT
ATTAAAGCAGTTGTTGATTTGAATGGGAGATTTTTTGGTGGAAGACAGGTCAAGGCTGGC
TTTTATGATGTAGAAAAGTTTGCATCTTTGCAATTAAATGAATGA

Protein sequence:

MSLYDDLDTIKARTSDKVAGWSSGIKLLQSQLQLKKAAVTQPKREALRRSNQVLTPVIDL
KSKSKDDDEPNTNSPKIQPKTITATLNVRDFDWNVANEYDPMWPNDYEKVAKEMQAKRLN
LDGSNERTERSERSERKRKTRFNDEEDVIPEKTLVPMQPEEEEVEEKTKRTAGVAIAPPP
SLTIESLSPPPVIPTPTASQGFSLGGYGASSVAAKIMAKYGFKEGQGLGKKEQGMSVALQ
VEKTSKRGGRIIHEKDSTNMMPPSFAMTSYSGPDSPNASNSPHSRQEPSITEIMKTPSKV
VLLRNMVGPGDVDEELEPEVKDECNTKYGEVVKVLIFEMPNAPSDEAVRIFVEFKRIESA
IKAVVDLNGRFFGGRQVKAGFYDVEKFASLQLNE