| New model in OGS2.0 | DPOGS214717 |
|---|---|
| Genomic Position | scaffold559:- 6588-9803 |
| See gene structure | |
| CDS Length | 1167 |
| Paired RNAseq reads | 3126 |
| Single RNAseq reads | 9047 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004892 (5e-167) |
| Best Drosophila hit | Rox8, isoform C (5e-119) |
| Best Human hit | nucleolysin TIA-1 isoform p40 isoform 1 (4e-85) |
| Best NR hit (blastp) | TIA-1-related RNA binding protein [Spodoptera litura] (0.0) |
| Best NR hit (blastx) | TIA-1-related RNA binding protein [Spodoptera litura] (2e-174) |
| GeneOntology terms | GO:0008143 poly(A) RNA binding GO:0003729 mRNA binding GO:0005685 U1 snRNP GO:0000398 nuclear mRNA splicing, via spliceosome GO:0000166 nucleotide binding GO:0003676 nucleic acid binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus |
| InterPro families | IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain IPR003954 RNA recognition motif domain, eukaryote |
| Orthology group | MCL12700 |
Nucleotide sequence:
ATGGGCGACGAAAGCCACCCGAAAACTCTCTACGTCGGTAATTTAGACGCGAGTGTGACA
GAAGAATTTCTATGCGCGTTATTCGGCCAAATAGGTGAAGTTAAAGGCTGTAAAATAATA
CGTGAACCAGGTAATGATCCGTATGCTTTCCTTGAGTTTACAAATCACGCGTCGGCGGCT
ACGGCCCTGGCCGCCATGAACAGGCGAGTATTTCTCGAAAAGGAAATGAAGGTTAACTGG
GCTACGAGTCCTGGTAATCAGCCTAAAACGGATACAAGCAATCACCATCATATATTCGTT
GGTGATCTATCACCAGAAATAGAAACCCATATTCTACGTGAAGCTTTTGCTCCGTTTGGC
GAGATTTCGAACTGTCGAATAGTACGTGACCCACAAACGCTCAAATCCAAGGGTTATGCC
TTCGTTTCGTTTGTTAAAAAAGCAGATGCTGAAGCGGCAATACAGGCTATGAATGGACAA
TGGTTAGGATCGCGATCCATACGTACTAATTGGTCAACGCGTAAGCCGCCAACCAAAGGT
CCAAACGAAGGAGCACCGAGTAGCAAACGTGTAAAACAACCAACATTTGATGAAGTTTAC
AACCAGAGCTCACCGACGAATACTACAGTTTACTGCGGCGGTTTCACTAGTAATGTAATT
ACAGAAGAATTAATGCAAAGCACATTTTCACAATTCGGCCAGATTCAGGACGTAAGAGTG
TTCAGGGATAAGGGATATGCTTTTATTAGGTTCACAACTAAAGAAGCCGCGGCTCATGCT
ATAGAAGCGACACATAATACCGAAATTAGTGGACACACAGTGAAGTGTTTCTGGGGTAAA
GAGAACGGAGGAACAGAGAATCAGAGCACGACTAATCCACCCGCTGCACCTGCATCAATG
GGTGCACAAACACAATATCCCTATGCATACCAACAAGGGATGGGATACTGGTACACTCAG
GGTTATCCTGCGATCCAGGGCTACATGGCGCCAGGGTATTATCAGCAGTATGCAGCCGCC
TACAGTAACCCTCAAGCAGCTGCTGCGGCGGGCTACCGCATGAGTATGCCGGGTGGCGCA
GTGGGTGCCGTGGGTGCGGGCGGTTCGTGGGGCGGCGCGCCTCAGCCGCTGGTGTATTCG
GTGCCTTCGCAGTACCCCTCGCAGTAG
Protein sequence:
MGDESHPKTLYVGNLDASVTEEFLCALFGQIGEVKGCKIIREPGNDPYAFLEFTNHASAA
TALAAMNRRVFLEKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETHILREAFAPFG
EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPTKG
PNEGAPSSKRVKQPTFDEVYNQSSPTNTTVYCGGFTSNVITEELMQSTFSQFGQIQDVRV
FRDKGYAFIRFTTKEAAAHAIEATHNTEISGHTVKCFWGKENGGTENQSTTNPPAAPASM
GAQTQYPYAYQQGMGYWYTQGYPAIQGYMAPGYYQQYAAAYSNPQAAAAAGYRMSMPGGA
VGAVGAGGSWGGAPQPLVYSVPSQYPSQ