| Genomic Position | scaffold736:+ 147183-151892 |
|---|---|
| See gene structure | |
| CDS Length | 3762 |
| Paired RNAseq reads | 2296 |
| Single RNAseq reads | 6272 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011612 (8e-91) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (0.0) |
| Best NR hit (blastx) | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (0.0) |
| GeneOntology terms | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
| InterPro families | IPR005135 Endonuclease/exonuclease/phosphatase IPR000477 Reverse transcriptase |
| Orthology group | MCL10012 |
Nucleotide sequence:
ATGTTGCGCCCGGAGTCACCCCTCGCTGATCACCGCAGCCTTCTGCCCCGCCGTCTTCTA
CCGGCCAAGGCACAAATCGCACCAGTTGATAAGAAGAAGAACAGACGATCTCTGGAACTA
AACCCTCCGTCCAACGACCACGCCCCATACGACTATCCCAAACTCCTCATATCGAAGACC
ACTGATTCACTTAACACGGAATGCCCTCGGAAACTGATCAACAAACAAGACTCCTCTGAT
AGTCTCAAGCGAGCGTTGTTATCCAAAGAAGATAAGAAATGTGCATTGAAAGAAGTAGAC
AAGAAGGTCTTAACTAAACAGGACTCAAACGAGAGCCTCAAGAAGAACCCGCTCAGCCGA
CAAGATTCGAATGATAGCGCGAAAAGAAGAGACTCGGATCCGAAATGGCTGAGATCAGAT
GAAAAGAAATCTGTGGAGATTAAGAGAGGCGGTGATAAGAAGGGTCTACTGGAGACCGAT
ATAGATGATGCGTGTAAACGTATCTACGAGAGGAGAACGGGCTGCGCTCGGCCTACTCTG
CCTCCTGTGGCGGAGAAGGGCGTGTCCCCCAAATCACCGAACGGAAGCCCCATAACGCCG
GGGGTGGTCGCGGTCGCTGAGGGGGTAGTGCGATGGGGCAGTGGACTACTGTCTCCCAAA
GACGAGCCAAGACTGAGACCAGCCAGGAGCTGGTATGGATATGGAACACTGCCCACTGAC
GGTGACAAGTCCCGTTTTACCCGTAAAACGGGGTTTTGGAGGTCAGACGGCAGTCGCTCC
GTTAAAACCACTCCCGCCACTCTTATGGTTGCAAAAGTTTATGGACTGGGTACGGCTAGG
GCGTCGCCGATAAACGACGCGCAGGCACATCGCCCTACACCTGCGATAAGTGGGCAAGGG
CTACCGTGTCAAGTACGGGCACGGCTAAAGACGTTAGTACCCCAAAGGAAACTCCGCTTT
GCAACGTGGAATATTGGCTCTCTAACCGGACGATGCAGAGAACTCGCAGATGTACTCATG
AGACGTCGGGTCCAGTGTGCGTTCCTCCAGGAAACTCGCTGGAAGGGCAATAAGTCTCGG
AACATCGGACAGGGTTACCGGCTGATATACACTGGGTCGCCTTCAGGTAAAGCTGGTGTA
GCGGTAGTGCTATCTGAAGAGCTTCGGAATGGTCTTCTTGAAGTTGATCGTCGCTGCGAC
CGCCTGATGCGGGTGCGGGTACTGATCGAGGGAGTGATTACTAACTTGATCAGTGCTTAT
ACTCCTCAGGCTGGATGTAGCGGGTCCGAAAAAGAGTCATTCTGGGAGCAATTTGAAGAG
GTTCTACGTGCTATACCAGCTGCTGAAGTAATCATAGTTGGGGGGGACTTAAATGGCCAC
GTAGGTAGGGCTGCGGAAACGTTTGACCGTGTACACGGTGGTTTTGGTTATGGTCGCCGC
AATGCAGAGGGAGAAAATATTCTCAGAACCTGTATTGCGTCTGACTTAGCCGTCGTGAAC
ACGTTCTTCCAAAAGACTCCACAGCACCTTATCACGTATAAGAGCGGGTCCCACTCAACC
CAAATAGATTATCTGCTGACCAGACGGTGTCATATCAGCAAGGTGACTAACTGTAAAGTC
ATTCCTGGTGAAAGCCTGACGGCCCAACATCGACTTCTTGTCATGGACTATGTCGTTACC
CCGAAAAAGAAAGTGGCCGAGAAACGTAAGCCTCGCATCAGGTGGTGGTTGCTGAATGGA
ACGATGCAGACCAGCTTTCGGGCAGAGGTTGAGAGTCAAAATCTGTCGACTAATACCGAA
ACTGCTCAGGAAGTTTGGGATCGAGCCCAGTCAGCAATTATCACAGCAGGTAAACGAGTT
CTAGGCCTTTCTAAGGGAGGACGGGTCATTGACAAGGAGACATGGTGGTGGAATGACGAA
GTGCAGGAGGTGATTCGTGAAAAGAAGACTGCCTTTAAGAAGTGGCAGCAATCAAACTCT
CCTGAAGACAGACTAGAGTACATAGCAGCGAAACGTGCCAGTAAAAGGGCTGTTGCCAGA
GCCCGCAGTGATAGGTTATCACCATTATATGATACACTTGAAACTGCGGAGGGGCAGAAG
CTCATTTACAAATTGGCACGAGCTCGGGATAAGGCGACGCAAGATATCGCAAAATGTCTT
AGCGTCAAAGATTCCCAAGGCACGTTGCTGTGTAATCATGCCTCTGTGAAGGAGAGATGG
AGATGCTACTTCAAGGAGTTGCTAAATACTCAGCACCCGTGCAGTCTTCCAACCGAAATA
CCTCCTAATCTTGGACTTATTGCCCCGATAACACCTGACGAAACTCGGAATTGTCTTCGA
CGCATGAAGAATCGGAAAGCGGTGGGACCTGACGATATTCCGATCGAAGCGTGGAAATCA
TTGGGCTCTCTTGGTGTGCTCATACTGACGGACCTTTTTAACCGCGTCTTGAACACTGGG
ACTATGCCACATCAGTGGCGTTATAGTTACATTACCCCTATATACAAAGGCAGGGGCAGT
GTTCAAGATTGTGGTAGTTATAGGGGCGTTAAGATCATGAGTCACACCATGAAGCTCTTT
GAGCGTATGATCGACCTCAGGCTCCGCCGAGAGTGTACTGTCTCGGAATGTCAATATGGA
TTTCAGCCAGGATCGGGCACCTTGGACGCCATCTTTGCCATCAGAACTCTGATGGAGGCA
TACAGGGAAAAAAGGAGAGCTCTGCATGTCGCATTCCTAGATCTGCAGAAGGCCTTTGAC
TGCGTGCCTCGTCAATGTATCTGGTGGGCATTGCGATTCAAAGGGATCCCTGAGGCCTAT
ATTGACATCATCAGAGACATGTACCGCGATTCCGTTTCAATGGTTAGGACTGCTGTTGGC
GATACAAAACCCTTTCCGATCTCAGTAGGGCTTCACCAAGGCTCGGCTCTTAGCCCCTTC
TTGTTCAATGTAGTGCTGGACACTGTCTCGGCTAACATCCAGGACCAGCCTCCATGGCTG
ATGATGTATGCCGATGACATAGCGCTCATTGATGAGAGCAGGTTGACGCTAGAGCGAAGA
GTGAACCTCTGGAAGGGTACGCTTGAGAACGGTGGTCTTAAACTAAATGTGACGAAGACC
GAGTACATGGCTTGCGGAAGCCCGGACTCTTGCACTATCCATATAGGTCCTGAACCAGCC
GTTAAGTCGGAAAAGTTCAGGTACCTTGGATCTATTCTGCATGAGTCCGGAGGCATCGAT
CACGATGTCCAAGCCCGGATCAGCGCTGCTTGGGCGAAATGGCGTGACGTCACAGGTGTG
GTCTGCGATCGCAGAATACCTACCAAGCTCAAGGGAATAATATACAAGAGCATAATCCGA
CCGGTTCTCTTATATGGAAGCGAATGTTGGCCAACACTGTCCAGGCACACTCAGGAGCTT
CACGTCACGGAGATGAAGATGCTGAGGTGGATGTGTGGCGTAACGCGGGCTGACCGTATA
CGTAACACATTTATCCGAGGTAGTCTTGGAGTCCGTGACGTAGCGGATAAGCTTCAAGAG
AGTCGCCTGAGATGGTATGGCCACGTTGCACGCCGGCCTGAGAATTACGTCGGAAAAATT
TGCCTTGATATGTCGGTCCCTGGAGCAAGACCCCCAGGACGCCCAAGAAAGCGATGGCTG
GACACCGTGAAGCAGGATATGAGAGCCAATGGACTTACCACCGCGGATGCTAAAGACCGT
GCAAAGTGGAGGAGTTATCAAAGTAACATAACTAACCTATAG
Protein sequence:
MLRPESPLADHRSLLPRRLLPAKAQIAPVDKKKNRRSLELNPPSNDHAPYDYPKLLISKT
TDSLNTECPRKLINKQDSSDSLKRALLSKEDKKCALKEVDKKVLTKQDSNESLKKNPLSR
QDSNDSAKRRDSDPKWLRSDEKKSVEIKRGGDKKGLLETDIDDACKRIYERRTGCARPTL
PPVAEKGVSPKSPNGSPITPGVVAVAEGVVRWGSGLLSPKDEPRLRPARSWYGYGTLPTD
GDKSRFTRKTGFWRSDGSRSVKTTPATLMVAKVYGLGTARASPINDAQAHRPTPAISGQG
LPCQVRARLKTLVPQRKLRFATWNIGSLTGRCRELADVLMRRRVQCAFLQETRWKGNKSR
NIGQGYRLIYTGSPSGKAGVAVVLSEELRNGLLEVDRRCDRLMRVRVLIEGVITNLISAY
TPQAGCSGSEKESFWEQFEEVLRAIPAAEVIIVGGDLNGHVGRAAETFDRVHGGFGYGRR
NAEGENILRTCIASDLAVVNTFFQKTPQHLITYKSGSHSTQIDYLLTRRCHISKVTNCKV
IPGESLTAQHRLLVMDYVVTPKKKVAEKRKPRIRWWLLNGTMQTSFRAEVESQNLSTNTE
TAQEVWDRAQSAIITAGKRVLGLSKGGRVIDKETWWWNDEVQEVIREKKTAFKKWQQSNS
PEDRLEYIAAKRASKRAVARARSDRLSPLYDTLETAEGQKLIYKLARARDKATQDIAKCL
SVKDSQGTLLCNHASVKERWRCYFKELLNTQHPCSLPTEIPPNLGLIAPITPDETRNCLR
RMKNRKAVGPDDIPIEAWKSLGSLGVLILTDLFNRVLNTGTMPHQWRYSYITPIYKGRGS
VQDCGSYRGVKIMSHTMKLFERMIDLRLRRECTVSECQYGFQPGSGTLDAIFAIRTLMEA
YREKRRALHVAFLDLQKAFDCVPRQCIWWALRFKGIPEAYIDIIRDMYRDSVSMVRTAVG
DTKPFPISVGLHQGSALSPFLFNVVLDTVSANIQDQPPWLMMYADDIALIDESRLTLERR
VNLWKGTLENGGLKLNVTKTEYMACGSPDSCTIHIGPEPAVKSEKFRYLGSILHESGGID
HDVQARISAAWAKWRDVTGVVCDRRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQEL
HVTEMKMLRWMCGVTRADRIRNTFIRGSLGVRDVADKLQESRLRWYGHVARRPENYVGKI
CLDMSVPGARPPGRPRKRWLDTVKQDMRANGLTTADAKDRAKWRSYQSNITNL