New model in OGS2.0 | DPOGS204590  |
---|---|
Genomic Position | scaffold411:+ 5431-10456 |
See gene structure | |
CDS Length | 2721 |
Paired RNAseq reads   | 551 |
Single RNAseq reads   | 1356 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001538 (4e-179) |
Best Drosophila hit   | CG10535 (5e-67) |
Best Human hit | elongator complex protein 1 (1e-67) |
Best NR hit (blastp)   | elongator complex protein 1 [Bombyx mori] (8e-176) |
Best NR hit (blastx)   | elongator complex protein 1 [Bombyx mori] (1e-166) |
GeneOntology terms    | GO:0006468 protein amino acid phosphorylation GO:0005515 protein binding GO:0005730 nucleolus GO:0005634 nucleus GO:0045449 regulation of transcription GO:0005737 cytoplasm GO:0008023 transcription elongation factor complex GO:0006461 protein complex assembly GO:0016944 RNA polymerase II transcription elongation factor activity GO:0005524 ATP binding GO:0007252 I-kappaB phosphorylation GO:0006357 regulation of transcription from RNA polymerase II promoter GO:0004672 protein kinase activity GO:0008607 phosphorylase kinase regulator activity GO:0006955 immune response GO:0003677 DNA binding GO:0004871 signal transducer activity GO:0016591 DNA-directed RNA polymerase II, holoenzyme |
InterPro families    | IPR006849 IKI3 IPR011046 WD40 repeat-like-containing domain IPR015943 WD40/YVTN repeat-like-containing domain IPR011990 Tetratricopeptide-like helical |
Orthology group | MCL14592 |
Nucleotide sequence:
ATGAAGAACTTGCGTTTGTGGAAAGTTTCGACAAAGAAACGAATAATAGAATGTAATGAT
AAATTTTTTGTTGGTTACGGCCATCCTGACGATTCTTCCACCGGTGAATTCTTCGTGTGT
TCGGTTAATGGTGTTGTAAGCTGCTTTGACAGCAATGGCAATAAAAAGTGGTTTACTGAC
CTTCCAAATGAAGCAGTAGAAGAAAACTTACCAGTTAATGTTTCCTTTCTATCCTTATCA
AATTCTGTAAGTATAGGTTTGTCAAATGGGGAGCTATTTACTATTAATGATTTTGGAAGT
ACCTGCGACCTGGCTGGCATCTGTGGAAATGGATTACTGGCTATGGAGTGGAGTCCAGAT
CAAGAACTATTAACACTGGTAACCAAAGATCTGAAAGTGATATTAATGTCTTGCACATTT
GACCCAATAAATGAATATTATTTGCTGAGTGAAGATTTTGGAGAAAAACAATTTATAACT
GTTGGCTGGGGAAAGAAGGAAACCCAATTCCATGGATCGGAAGGAAAACAAGCGGCAAAG
GCAAAAACTGAGGTTGTAGGCAACATGATCGAATCTAATAATAGGGTTATTATCTCATGG
AGAGGGGACGGAAACTTGTTTGCTGTTGGCTTTGTTATTGAGGGCATAAGAAGATTTAAA
GTATTTGACAGAGAAGGTAACTTGCAGTATACAAGTGAAAAACAACCTGGGCTTGAAGCA
AACCTGTCTTGGAGGCCTAGTGGAAATTTAATAGCAACTACGCAAAAACTCCCTGAAAAG
TACCTTGTTTCATTCTTTGAGAAAAACGGTCTTAAACATGGAGAATTTGTAATACCTGTT
AATTCAACTACCACTGTTGAAGATATCTTCTGGAGCTCAGATTCTGAGATCTTGACTCTA
TTATGCACAGACAAAGCTGATAATACTCAACAGATTTTACTCTTTACATCAAGCAACTAC
CATTGGTATCTTAAACAGCAATTATATTTCAATGCTGACCAGAAAATTACTAAACTCATG
TGGGATAATGATTTTGATGTTGCAAATAACAAAAAAATGCATCTTATATTAGAAAATGGT
CAGTACCTCGCATATACTTGGATTTTTGATATAAATCACAGCAATGGAAGATCAGATAAA
GATGATGCAATTGTATCTGTGATAGATGGAAACAAAGTATTACTCACTGCTTTTAGATAT
ACAGTTGTGCCACCACCAATGGCTGGCTTTGAAATGGAATTTGATTCTACAATAAATTCT
CTCCATTTTGCACCCAGTTACCTCGACTCGAATTCATTTTTCATATGTATGAATGACAAA
TTAGTGTTTATGGAACAAACAAAGAAGAATCCCCTTGAATATAAAATAACTAAAATAATA
CATTGTGAAAAATCTGATTTTTCTTTCCAATTTTATAATTGGCATTGGTTGGATTGTGAG
ACTGTATTATGTGCTGCAGTTGATAATGACAATAATAACAAAATTATTCAATACAAAATA
TCCTCAGAAAATTTAGTGAGACACAGTGAACAGTTAATACCTTCTGCTTTAACACACATT
GTTAGCCACCCCTTAATAACTACAAGTGTTTTTTTGCAAATGGATACTGGTGAAGTTTTA
GAATACAGTTCAGATAATACTATTAAGCCACAAGATATAGTACTACCAGAAACGTGTCCT
ATTCTTTATAGAGAGGCATTGGACCTCTTTAGTAAAGATGATGAAATATACAAACAGATT
TGTGATGACTTTGGACTATACTTAAAATTAAAAAAACAATATGTAGAGGCTGGTATTGTA
TATGAAACGGCTAAAAATATTGATAAAGCCATTGAATGTTACAAAGACGCACTTGAGTGG
GAATTAGTTCTGAATTTAGCCCAAAATAAAACAAAGCAAGAATTGAAAGACTTATGTTGG
GATATTGCAACAGCATTAAAAGACGAAAAGAGGTATACAGAGGCATTGACAGTTTTAGAC
ACAATAAGTGAAGATGGTGAAGAAGTAATTTGCATGGCTATTGAATGTGCCCAATATAAA
ACCGCTTTAAGATTAAGTTCAAAATACAATAAGAGAGATTTAATTGTCAAAAATTTGCTG
CCATCTCTTATGAATGAATACAACAACACGAAGGACTTGCTGGAAACCAACACGAAAAAA
TTTATTACGTACAGAAATCGTCTTCAAGTCGTTAGAGATAATAAAAGCAAAAAACCCGTT
GAAAACTATGATTCGTTCGCTACGAGGGATTGTGATTTATATTCTGATGCTGGCAGCACA
ATTGCATCTTCAGGCTCTGGGAGGTCATACCGATCGAGTAAAAATCGCAGGAAGCACGAA
CGTAAGGTGGCATCGCTCAAGGAAGGTTCACAGTATGAAGACACGGCACTTGTTTTAGCC
TTACACAGCTTAATAACAACAACATTTGACATGCGTTCACCGATAAAGGACCTTAATATT
GCTTTATGTTGTTTAGAAAAAAATAAGGAGGCGTTAGATCTGCAGTCGAGTCTCGGAAAA
TTACTTAAAGATATGAAAGAAAGCTTTAGACAGATTTGGAGCAATAATTTCACGTTAGAA
GCTACAAACGCGGCCATTGAAGCAGAAAATGTACCAGAAGGTTGCAGTGTGATACCTCAG
GGAATGGCTACTCTCGAACCTCAAATAAGAATAGCGCCTGTTATACATGATATACCATGG
ATGCTCGATGGACTTAACTAG
Protein sequence:
MKNLRLWKVSTKKRIIECNDKFFVGYGHPDDSSTGEFFVCSVNGVVSCFDSNGNKKWFTD
LPNEAVEENLPVNVSFLSLSNSVSIGLSNGELFTINDFGSTCDLAGICGNGLLAMEWSPD
QELLTLVTKDLKVILMSCTFDPINEYYLLSEDFGEKQFITVGWGKKETQFHGSEGKQAAK
AKTEVVGNMIESNNRVIISWRGDGNLFAVGFVIEGIRRFKVFDREGNLQYTSEKQPGLEA
NLSWRPSGNLIATTQKLPEKYLVSFFEKNGLKHGEFVIPVNSTTTVEDIFWSSDSEILTL
LCTDKADNTQQILLFTSSNYHWYLKQQLYFNADQKITKLMWDNDFDVANNKKMHLILENG
QYLAYTWIFDINHSNGRSDKDDAIVSVIDGNKVLLTAFRYTVVPPPMAGFEMEFDSTINS
LHFAPSYLDSNSFFICMNDKLVFMEQTKKNPLEYKITKIIHCEKSDFSFQFYNWHWLDCE
TVLCAAVDNDNNNKIIQYKISSENLVRHSEQLIPSALTHIVSHPLITTSVFLQMDTGEVL
EYSSDNTIKPQDIVLPETCPILYREALDLFSKDDEIYKQICDDFGLYLKLKKQYVEAGIV
YETAKNIDKAIECYKDALEWELVLNLAQNKTKQELKDLCWDIATALKDEKRYTEALTVLD
TISEDGEEVICMAIECAQYKTALRLSSKYNKRDLIVKNLLPSLMNEYNNTKDLLETNTKK
FITYRNRLQVVRDNKSKKPVENYDSFATRDCDLYSDAGSTIASSGSGRSYRSSKNRRKHE
RKVASLKEGSQYEDTALVLALHSLITTTFDMRSPIKDLNIALCCLEKNKEALDLQSSLGK
LLKDMKESFRQIWSNNFTLEATNAAIEAENVPEGCSVIPQGMATLEPQIRIAPVIHDIPW
MLDGLN