New model in OGS2.0 | DPOGS203588  |
---|---|
Genomic Position | scaffold783:- 94562-98875 |
See gene structure | |
CDS Length | 1299 |
Paired RNAseq reads   | 1040 |
Single RNAseq reads   | 2598 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001348 (1e-12) |
Best Drosophila hit   | CG9003, isoform B (4e-147) |
Best Human hit | F-box/LRR-repeat protein 20 isoform 1 (2e-141) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC013252 [Tribolium castaneum] (2e-179) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC013252 [Tribolium castaneum] (0.0) |
GeneOntology terms   | GO:0005515 protein binding |
InterPro families    | IPR001810 F-box domain, cyclin-like IPR006553 Leucine-rich repeat, cysteine-containing subtype |
Orthology group | MCL10764 |
Nucleotide sequence:
ATGTCAAAAGTTATTAATGCTAAAGAGAAGAAAATTTCTCGTTTTTCCGGAGAAGACGAG
AACCACATCAATAAGAAGCTACCAAAGGAACTATTGTTGAGAATACTGTCGTATCTGGAC
GTCGTCTCCCTGTGCAGATGTGCTCAGGTGTCGAAGCTATGGAACATCCTGGCGCTGGAC
GGCTCCAACTGGCAGAAGATAGACCTGTTCGACTTCCAGAGAGACGTCGAGGGTCCAGTG
ATAGAGAATATCTCTCAGCGGTGCGGCGGCTTCCTGCGCACGCTGTCCCTGAGGGGCTGC
GAGAGCATCGGCGACGGATCCATCAAGACCCTGGCGCAGTCGTGTGCCAACATCGAGGAT
CTGAACCTGAACAAGTGCAAGAAGATCACCGACCAGTCGTGCCAGGCGCTGGGGAGGAGG
TGCAGCAAGCTACAGAGGATAAACCTGGACTCGTGCCCCAGCATCACGGACGTGTCACTC
AAGGCGCTCTCAGACGGCTGTCCCCTACTGACTCACGTGAACGTGTCGTGGTGTCAGTCC
ATCACTGAGAACGGAGTGGAGGCGCTCGCCCGGGGCTGTCCCAAACTAAAGAGCTTCATA
TGTAGAGGTTGTAAGAACGTGAACGACCGCGCCGTGACGAGTATAGCGACGCACTGCCCC
GACCTGGAGGTGTTGAACGTACAGGGCTGCGAGAACCTGACAGACGAGTCCATCTCGTCC
CTGGGCGCGTCCGTCCGCCGGCTGTGTGTGTCGGGGTGCCCTCGCCTCACGGACCTGTCC
CTGTGCTCGCTGGCGGCGCGCTGTCCTGACCTCACCACGCTCCAGCTGGCGCAGTGCAAC
ATGCTCACCGACGCCGGCTTTCAGGCGCTCGCCAGGAGCTGCCGGATGCTGGAGAGGATG
GACCTGGAGGAGTGTGTGCTGATTACGGACGCCACGCTCGTGCACCTGGCCATGGGTTGT
CCGCGCCTGGAGAAACTGACGCTCTCCCACTGCGAGCTGATCACCGACTACGGCATCAAG
CAGCTGTCGATGTCTCCCTGCGCCGCGGAACACCTCACAGTACTCGGTCTGGACAACTGC
CCGCTGGTGACGGACGGCGCGCTGGAACACCTGGTGTCGTGTCACAACCTGCAGCTCATC
GAGCTGTACGACTGCCAGATGGTCACCAGGAACGCCATCAGGAAACTCAGGAACCACCTG
CCTCATATAAAGGTGCACGCCTACTTCGCGCCCGTGACTCCGCCCGCGGCCGGCGCCGGC
TCCAGGCCGCGCTACTGTCGCTGCTGTACCATCATATAA
Protein sequence:
MSKVINAKEKKISRFSGEDENHINKKLPKELLLRILSYLDVVSLCRCAQVSKLWNILALD
GSNWQKIDLFDFQRDVEGPVIENISQRCGGFLRTLSLRGCESIGDGSIKTLAQSCANIED
LNLNKCKKITDQSCQALGRRCSKLQRINLDSCPSITDVSLKALSDGCPLLTHVNVSWCQS
ITENGVEALARGCPKLKSFICRGCKNVNDRAVTSIATHCPDLEVLNVQGCENLTDESISS
LGASVRRLCVSGCPRLTDLSLCSLAARCPDLTTLQLAQCNMLTDAGFQALARSCRMLERM
DLEECVLITDATLVHLAMGCPRLEKLTLSHCELITDYGIKQLSMSPCAAEHLTVLGLDNC
PLVTDGALEHLVSCHNLQLIELYDCQMVTRNAIRKLRNHLPHIKVHAYFAPVTPPAAGAG
SRPRYCRCCTII