| New model in OGS2.0 | DPOGS206093 |
|---|---|
| Genomic Position | scaffold231:- 98593-99564 |
| See gene structure | |
| CDS Length | 972 |
| Paired RNAseq reads | 1839 |
| Single RNAseq reads | 5212 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006819 (4e-109) |
| Best Drosophila hit | Rad23, isoform A (7e-51) |
| Best Human hit | UV excision repair protein RAD23 homolog A (8e-58) |
| Best NR hit (blastp) | nuclear excision repair protein rad23 [Bombyx mori] (9e-146) |
| Best NR hit (blastx) | nuclear excision repair protein rad23 [Bombyx mori] (1e-109) |
| GeneOntology terms | GO:0006289 nucleotide-excision repair GO:0003684 damaged DNA binding GO:0043161 proteasomal ubiquitin-dependent protein catabolic process GO:0005515 protein binding GO:0005634 nucleus |
| InterPro families | IPR015360 XPC-binding domain IPR009060 UBA-like IPR000449 Ubiquitin-associated/translation elongation factor EF1B, N-terminal IPR000626 Ubiquitin IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote IPR006636 Heat shock chaperonin-binding IPR004806 UV excision repair protein Rad23 IPR019955 Ubiquitin supergroup |
| Orthology group | MCL11810 |
Nucleotide sequence:
ATGTTACTGACTTTAAAAACTCTTCAACAACAAACTTTTCAGATAGAAATAGACCCTCAA
GAGACTGTCAAAGCGCTGAAGCTTAAAATTGAAGTGGAAAAAGGTAAAGATTATGCGGCA
GACAATCAAAGACTTATTTATGCGGGTAAGATTCTTCTCGATGATAATAAACTGCATACG
TATAATATAGATGAAAAGAAATTCATCGTTATCATGGTGACAAAACCGAAAACTTCCGAT
AATCAACAAGCGTCGTCGACCTCGGCGCCAGAAGCCGGGGAAAGTGCGTCAACTGAAAGC
GGCGACGGCAAAAGTAAAGTGGTCGAAGAAAAACCAAAACCTCAGCCTGCAGCGGAACCT
GAGCGTGCATCTGAACCACCAGTAACATCAAATGAGCCAGATTTTGAATCAACAGTGCAA
AGCATTATGGATATGGGCTATAATAGACAACAAGTAGAACAAGCTCTCCGTGCTTCATTT
AATAATCGTGAAAGAGCTGTAGAATATCTCATAACAGGAATCCCTGAAGAGCTACTTCAA
GAACAGGAAGCTGAAGAAAGTGCTGATGAAGACCCCTTGGGCTTTCTTCGGGATCAACCA
CAGTTTCAACAAATGCGTGCAGTGATTCAACAGAATCCTAATTTACTGAATACTGTGTTG
CAGCAAATTGGTCAAACAAACCCAGCTTTACTTCAAGCTATTAGTCAGCATCAACAGGCT
TTTGTGAGAATGTTGAATGAGCCTGTGAACCCATCTGCAGCTGGAGCCGTAGCCGAGGAG
GCAGTGCCTGACAATCCAGTGCCCCAACAGCCTCAAAATGTTATTCAAGTATCTCCTCAA
GACAAAGAGGCTATTGAAAGATTAAAAGCCTTAGGTTTTCCAGAACATATGGTTATTCAA
GCGTATTTTGCGTGTGAGAAAAACGAAAATCTTGCTGCAAATTTCTTGTTGTCGCAAAAT
TTTGATGATTAA
Protein sequence:
MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKDYAADNQRLIYAGKILLDDNKLHT
YNIDEKKFIVIMVTKPKTSDNQQASSTSAPEAGESASTESGDGKSKVVEEKPKPQPAAEP
ERASEPPVTSNEPDFESTVQSIMDMGYNRQQVEQALRASFNNRERAVEYLITGIPEELLQ
EQEAEESADEDPLGFLRDQPQFQQMRAVIQQNPNLLNTVLQQIGQTNPALLQAISQHQQA
FVRMLNEPVNPSAAGAVAEEAVPDNPVPQQPQNVIQVSPQDKEAIERLKALGFPEHMVIQ
AYFACEKNENLAANFLLSQNFDD