| New model in OGS2.0 | DPOGS202807 |
|---|---|
| Genomic Position | scaffold2584:- 19701-27236 |
| See gene structure | |
| CDS Length | 2829 |
| Paired RNAseq reads | 685 |
| Single RNAseq reads | 1604 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010454 (4e-27) |
| Best Drosophila hit | scab, isoform B (8e-45) |
| Best Human hit | integrin alpha-4 precursor (8e-44) |
| Best NR hit (blastp) | hemocyte-specific integrin alpha subunit 3 [Manduca sexta] (0.0) |
| Best NR hit (blastx) | hemocyte-specific integrin alpha subunit 3 [Manduca sexta] (0.0) |
| GeneOntology terms | GO:0007155 cell adhesion GO:0050839 cell adhesion molecule binding GO:0005886 plasma membrane GO:0004872 receptor activity GO:0008305 integrin complex GO:0007391 dorsal closure GO:0016477 cell migration GO:0007494 midgut development GO:0016340 calcium-dependent cell-matrix adhesion GO:0005925 focal adhesion GO:0007157 heterophilic cell-cell adhesion GO:0007160 cell-matrix adhesion GO:0016339 calcium-dependent cell-cell adhesion GO:0005055 laminin receptor activity GO:0007431 salivary gland development GO:0007507 heart development GO:0016021 integral to membrane GO:0007424 open tracheal system development GO:0008355 olfactory learning GO:0007613 memory GO:0005198 structural molecule activity GO:0040011 locomotion GO:0007611 learning or memory GO:0007411 axon guidance GO:0007614 short-term memory GO:0006911 phagocytosis, engulfment |
| InterPro families | IPR000413 Integrin alpha chain IPR018184 Integrin alpha chain, C-terminal cytoplasmic region, conserved site IPR013519 Integrin alpha beta-propellor IPR013649 Integrin alpha-2 IPR013517 FG-GAP |
| Orthology group | MCL12038 |
Nucleotide sequence:
ATGTTATTATGCGAGTGTAGTGAGATTTATGAAGTAAAAAATAAAATTACATTAAAACCA
GACGATGACTCGGAATATTTTGGCTACACAGTAGTTATGGATTCAAATGTATTAATTGTG
GGGGCGCCCAAAGCACGAAGCAAGCTGGCCAGAATGATGGCCACAGGACAGGTTTACAAT
TGCAAAATACTTGGTTTTGATGTTCACAACGTAACATGTTACCCTCTCGGAAGTAATGGC
ACAGCTCAAGACGCTATATTCGGACGGTTCGCGGGTTATTCTGATTTCTTCAGGGATGAT
ATGTGGTTCGGAGCTGTAATCGCTTTGGTTCCCAACGGAAAGTTATTGATTTGCTCACCG
AGATGGACAAATCCTTACAAGGATACACATTTACTCGCGAACGGTGCTTGTTACATCCAG
GCCCAAAGGAGAGCTTTAAGTCTCCTTCCACTAAAAGACATGACCCGACAAGCGTTTATG
ACACAGGGTTTAAGGAAGGAATACGGGGAATACGGCACCCATCTCAATTTTTATGCCTAC
GGTCAAGCAGGCTTCTCAGCAAAAGTAACAGAAAACAATAGCGTTATAATCGGAGCGCCA
GGCCTCTTGCAATGGACCGGTGGAATCGTGGAATACAAATATTACCCAGATCCAAGAAGT
GTCCTTTTTGGTTTGCAACCTATTACGAATCCATATTACACTCCAGATTTAGGACCGGAT
GATTACTTAGGATACAGTGTCGAGTCTGGCATATTTGAAAAAAACGGAAGGACATTGTAC
GTAGCTGGAGCTCCGAGATCCAAAGCTGGTTATGGCCAAGTGTTAATAATTGAGCCATCG
TTTAGAGAAAACGGACCTCTGAACATTAAAGCCAAGTTGATAGGTCATCAGCTGGGATCC
TACTTCGGAGCCAGTATGTCATGCACTGATATCAATGGTGATGGTATATCGGATTTGATG
GTGGGAGCACCAAATTTCGTCATTCACGATGGCAGTCTTCATTACGACCAAGGAGCGGTG
TTTGTCTATTTGACAGAAAGTCAGGAATCAAATTTCACTCTGATTGAACATGCTTATGTA
TTTGGATCAGCACGGAGTGGATCGCGGTTTGGAAGTTCGATCGCTAATTTAGGAGATATA
GACGGGGATGGTTACAATGACATAGCTATTGGTGCTCCATGGGAGAATGACGGTATCGGA
GCTGTATACATTTATCGAGGTGGCGCTGATGGGTTAGTCCAGCCATTTGTACAAAAAATT
TTTGTTGAAGAAGCGAGAAGTTTTGGTGTTTCGATTTCCAAGGGTGTAGATTTAACTAAC
GATAATTGTAATGAGCTAGCTGTAGGCGCTCTCAATTCCCGCACAGCATATATTTTCAAA
TGCATACCAACAATGCATGTGGACGTTTCTATTAAAGTCCCGGATGCAATGAACTTGCAA
CAAAACGCTACCAACTTCACTGCTTTATTCTGTGTTAATGCGCGCTCCAGTAAATTGTGG
CCTCATGTGAAAATAGACTTTATAGGCAGAATAGTTATTGATCCCGAGGAAAACAGGGCA
AAGCTAAAAGATGACACTGAATATGACATCACAATTGCACCAGGAGATGAGAATTGTGAT
GAACAAATTGTAGAAGTGATGACAACGGCAGACTTGTCTAAACCAATTTCGATGAAATTC
AATTTGGAGGTCAATGAATATCCGATAGAAAACTCGGATTTGCAGCACGCCGCTAGACTT
GAGGAAAACTCTATTCTAGAAACTACATTAGATATCCAACTGACGAGAGACTGTGGAGAA
GATCTTATCTGTAAGCCCTTGCTAGAAATGACATTGGAACCTTTAAATAGTCCATACGTT
CCAGGTTCAGAACACAGGCTTGGACTAAAAGTGACAGTTTTGAATAAAGAGGAGCCATCG
TATGGGGCCAAAGTTCATCTCATTGTTCCTTCTTCACCGAAGCGTCTCCCAACTGAATGC
TCTTTACAAAACTTAAATGTAACTTGTAGTCTTCCGGCTCCATTGATGAGAATGAATTCA
GTTGTATTTGAAATAGAATTGGAATATATACCTATAGACAGAGCTGAAGATCTACTAATA
ATAAAGGCTAGACTAGAAGATCCGCTATATGAAGATTCTGATATAGAAAGGGCATTCCAG
GAGTTAGACATTGTTATTACACCTAAAGCAAACTTTGCTATTAGCGGAAAATCGTTACCC
AACGCGACTATACTAGTGACAAGAGACAAACTTCATGGGGACGAAAATATAACATTTGTT
CATCAGTATGAGATCATGAATTGGGGACCATCTGACTGGTATCGTTTGAGAGTACAAATA
ATTTTATCCGAAAAGGTCAACATGTCGACTCGACTTAAAGAATGTTTGGAACTAGACCGA
GTAACTCATTGCGAATGGAAGCTTCCAGCAAAAGTTTCTTTGCCAGTGGTTCTACCTCTG
CGCTTTGATTTACATGATCACGGTGAATTCTTAGAAAAAAAAGTTGTGTACAACATCACC
TCTACAATGACCATTCTATTGGAAGATCAGAATAAATCTGTTTCGACGATCACAACTTTG
ATTTTGGAGCCTGAGCAACCCTATTGGCCAGTTATTGTTGGTTGCATAGCAGGCCTCCTT
TTGCTATCCGCTATTATTACAGGATTTTATAAATGTGGATTCTTCTCGAGAAAAAGAATT
GAAGATTTCCAAAGACTTCAGGAACACCAGGCGGATGGAGCTTCTCCATCAGATGCGAAT
ATTTCAGTTGGCTCACTTGGTGAGAACGATAAATCGACACAAGAATTAATCACTGATGAC
TCAGATTGA
Protein sequence:
MLLCECSEIYEVKNKITLKPDDDSEYFGYTVVMDSNVLIVGAPKARSKLARMMATGQVYN
CKILGFDVHNVTCYPLGSNGTAQDAIFGRFAGYSDFFRDDMWFGAVIALVPNGKLLICSP
RWTNPYKDTHLLANGACYIQAQRRALSLLPLKDMTRQAFMTQGLRKEYGEYGTHLNFYAY
GQAGFSAKVTENNSVIIGAPGLLQWTGGIVEYKYYPDPRSVLFGLQPITNPYYTPDLGPD
DYLGYSVESGIFEKNGRTLYVAGAPRSKAGYGQVLIIEPSFRENGPLNIKAKLIGHQLGS
YFGASMSCTDINGDGISDLMVGAPNFVIHDGSLHYDQGAVFVYLTESQESNFTLIEHAYV
FGSARSGSRFGSSIANLGDIDGDGYNDIAIGAPWENDGIGAVYIYRGGADGLVQPFVQKI
FVEEARSFGVSISKGVDLTNDNCNELAVGALNSRTAYIFKCIPTMHVDVSIKVPDAMNLQ
QNATNFTALFCVNARSSKLWPHVKIDFIGRIVIDPEENRAKLKDDTEYDITIAPGDENCD
EQIVEVMTTADLSKPISMKFNLEVNEYPIENSDLQHAARLEENSILETTLDIQLTRDCGE
DLICKPLLEMTLEPLNSPYVPGSEHRLGLKVTVLNKEEPSYGAKVHLIVPSSPKRLPTEC
SLQNLNVTCSLPAPLMRMNSVVFEIELEYIPIDRAEDLLIIKARLEDPLYEDSDIERAFQ
ELDIVITPKANFAISGKSLPNATILVTRDKLHGDENITFVHQYEIMNWGPSDWYRLRVQI
ILSEKVNMSTRLKECLELDRVTHCEWKLPAKVSLPVVLPLRFDLHDHGEFLEKKVVYNIT
STMTILLEDQNKSVSTITTLILEPEQPYWPVIVGCIAGLLLLSAIITGFYKCGFFSRKRI
EDFQRLQEHQADGASPSDANISVGSLGENDKSTQELITDDSD