New model in OGS2.0 | DPOGS207210  |
---|---|
Genomic Position | scaffold425:+ 69613-72113 |
See gene structure | |
CDS Length | 1158 |
Paired RNAseq reads   | 250 |
Single RNAseq reads   | 591 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010706 (5e-86) |
Best Drosophila hit   | bagpipe (2e-29) |
Best Human hit | homeobox protein Nkx-3.2 (5e-30) |
Best NR hit (blastp)   | PREDICTED: similar to Homeobox protein bagpipe (NK-3) [Tribolium castaneum] (6e-36) |
Best NR hit (blastx)   | PREDICTED: similar to Homeobox protein bagpipe (NK-3) [Tribolium castaneum] (2e-34) |
GeneOntology terms    | GO:0048703 embryonic viscerocranium morphogenesis GO:0043565 sequence-specific DNA binding GO:0003677 DNA binding GO:0006355 regulation of transcription, DNA-dependent GO:0003700 sequence-specific DNA binding transcription factor activity GO:0030528 transcription regulator activity GO:0045449 regulation of transcription GO:0005634 nucleus |
InterPro families    | IPR020479 Homeobox, eukaryotic IPR017970 Homeobox, conserved site IPR001356 Homeobox IPR009057 Homeodomain-like IPR012287 Homeodomain-related |
Orthology group | MCL20412 |
Nucleotide sequence:
ATGGAGTCCAAATTAAATTACAAAGACACTCGCATACAGGACAGTGATAAAACCAATATA
AATCTGACGACACCGTTCTCAATAAACGACATTCTGACTAGAGAGAATGAATCCAAGTGC
AATTTTGAAAATGGAATGTTTTGCTCGGACGCGTTCGGCGGGAAAATGAAATGTCACAAA
CCGGCCAGTTACAATAAAGACGATTATAAGAAAGAGGCCACTGAAAAGAGTATGAATTAC
TACGACGATAATTATAAGGATTACACTGATGATGGAGCCATTGATATGTCTAGGAAGAAT
AATTTCCCAGTCACAGAATTATCCGATGACTACGACTCCCGCTCGTCCAACACTGGCTCT
CCGCGACGTCACTCCTCCCCCTCCTGCGACAGCTACCGGCCCTTCATACAGTACGACAGG
AAGTGCAGCACCCCCACAGACTCTAGACACGGGTACATGGAGTACACACAGAACAGCGGG
CGCAAGAAACGCTCCAGGGCCGCCTTCTCCCACGCTCAGGTGTACGAGCTGGAGAGGAGA
TTCAGTCAACAGAGGTATCTATCGGGACCAGAGCGCGCTGACCTCGCCGTCAGTCTGAAA
CTGACGGAGACGCAGGTCAAGATCTGGTTCCAGAACCGACGGTACAAGACTAAGAGGAAA
CAGATGCAGTTACAAGAGAGCGGCTTACTAGCGAACCACGCGAGGAAGGTGGCTGTGAAG
GTGCTGGTTAACGGACAGCTCCCGGACATTAAGGCGTACCAAGCACCGTGCAAGAACCCA
GCACTGTTCCCGCCACCGATGCTTGATAACTCGATAATAAAGCACTTCGCCGGCGTCTAC
GATTTTGCTAAAAATCCCGAATACAAGGCACTCCTGCAAGAGTCCTACAACCAGGCTGTG
TTACAATCGCTGTACGCTCCGCACATGGGGGTAAATTACCCGAATTTACCCTTATCGTAT
ATGTATTACCCCGGACATCCAGCGTTCGGGATGCCGTGCGACATGAATGGGGAGACTAGC
GACAAGTACGCGGGTAACAGGGGTAACGGGGGTAACAAAGGTAACGAGGGTAACAAGGGT
AACGATAAATGCAAACCAATGGACGTCAACGAGAATAGCAACGATAGTGTTGCGAGCAAC
ATAGAAGTCGAAAATTAA
Protein sequence:
MESKLNYKDTRIQDSDKTNINLTTPFSINDILTRENESKCNFENGMFCSDAFGGKMKCHK
PASYNKDDYKKEATEKSMNYYDDNYKDYTDDGAIDMSRKNNFPVTELSDDYDSRSSNTGS
PRRHSSPSCDSYRPFIQYDRKCSTPTDSRHGYMEYTQNSGRKKRSRAAFSHAQVYELERR
FSQQRYLSGPERADLAVSLKLTETQVKIWFQNRRYKTKRKQMQLQESGLLANHARKVAVK
VLVNGQLPDIKAYQAPCKNPALFPPPMLDNSIIKHFAGVYDFAKNPEYKALLQESYNQAV
LQSLYAPHMGVNYPNLPLSYMYYPGHPAFGMPCDMNGETSDKYAGNRGNGGNKGNEGNKG
NDKCKPMDVNENSNDSVASNIEVEN