New model in OGS2.0 | DPOGS203195  |
---|---|
Genomic Position | scaffold2331:+ 9684-18473 |
See gene structure | |
CDS Length | 519 |
Paired RNAseq reads   | 84 |
Single RNAseq reads   | 347 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011413 (2e-15) |
Best Drosophila hit   | nautilus, isoform A (3e-11) |
Best Human hit | myoblast determination protein 1 (3e-09) |
Best NR hit (blastp)   | MYOD-like DNA-binding protein [Trichinella spiralis] (1e-24) |
Best NR hit (blastx)   | myogenic differentiation protein [Saccoglossus kowalevskii] (1e-12) |
GeneOntology terms    | GO:0003700 sequence-specific DNA binding transcription factor activity GO:0016202 regulation of striated muscle tissue development GO:0005634 nucleus GO:0003677 DNA binding GO:0007517 muscle organ development GO:0006355 regulation of transcription, DNA-dependent GO:0030528 transcription regulator activity |
InterPro families    | IPR002546 Myogenic basic muscle-specific protein IPR001092 Helix-loop-helix DNA-binding domain IPR011598 Helix-loop-helix DNA-binding |
Orthology group | MCL12685 |
Nucleotide sequence:
ATGAGCTACAGCGCCATCTATGACTACAGTTTGGATTTACCGAAAAACAATGGGTGTTGT
GATATAAAGGAGGAGGAAAAGAACGAGGAGCACATACAGCATGTGCTGGGACCCAGCAGA
CGATGTCTGGCCTGGGCCTGCAAGGCCTGCAAGAGAAAAACAGCAGCTGTTGACAGGCGG
AAAGCGGCCACGCTACGTGAGAGAAGGAGATTAAGAAAAGTGAACGCTGCTTTCGAAGAG
TTACGAATACGTGCTCGGGCTGGGAGTGGACGTCTGCCAAAGCTGGAGATACTCCGAGCA
GCCATCCAGCACATTGAGAGGCTCCAAGCCGCCCTTAGAGCAGCAACCGCTCTGGACTCT
GACAGCTGCAAGAACTACGCAGAGCCGGCGAGGAAGCCTGACAGCAAGCAAAGTAAAAAT
GAAAAGGAGAAGCCCTTCCTCAGCGGTGACCCAACGTGCGGGCTGAACAGTCTAGCGAGG
TTGCGCTGCATCGTACAGGCTCTGGCAAATGAAACGTGA
Protein sequence:
MSYSAIYDYSLDLPKNNGCCDIKEEEKNEEHIQHVLGPSRRCLAWACKACKRKTAAVDRR
KAATLRERRRLRKVNAAFEELRIRARAGSGRLPKLEILRAAIQHIERLQAALRAATALDS
DSCKNYAEPARKPDSKQSKNEKEKPFLSGDPTCGLNSLARLRCIVQALANET