| New model in OGS2.0 | DPOGS202271 |
|---|---|
| Genomic Position | scaffold490:- 14802-15876 |
| See gene structure | |
| CDS Length | 810 |
| Paired RNAseq reads | 162 |
| Single RNAseq reads | 476 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004985 (6e-119) |
| Best Drosophila hit | CG5380 (6e-80) |
| Best Human hit | DNA-directed RNA polymerase III subunit RPC6 (2e-77) |
| Best NR hit (blastp) | PREDICTED: similar to DNA-directed RNA polymerase III 39 kDa polypeptide (RNA polymerase III C39 subunit) [Apis mellifera] (7e-95) |
| Best NR hit (blastx) | PREDICTED: similar to DNA-directed RNA polymerase III 39 kDa polypeptide (RNA polymerase III C39 subunit) [Apis mellifera] (4e-92) |
| GeneOntology terms | GO:0003899 DNA-directed RNA polymerase activity GO:0005666 DNA-directed RNA polymerase III complex GO:0006383 transcription from RNA polymerase III promoter GO:0005634 nucleus GO:0003677 DNA binding GO:0006350 transcription |
| InterPro families | IPR007832 RNA polymerase Rpc34 IPR016049 RNA polymerase Rpc34-like |
| Orthology group | MCL14938 |
Nucleotide sequence:
ATGGCAGCTGCAGTGCCTGAATTAACTTCTGCTGAACTCGTAGCTGCAATTAACAAATTA
CTTCAGCAAGGGGTTTTCGATCTATATAATCAAGGAGGCTCTTTACTATATAGATTGAAA
AATCAAAACTCCAAACAAGCAATAAAAGGGGCTGATAATGAAGAAAAAGTTGTATATAAT
TTAATAGAGGAAGCTGGTAATAAGGGAATATGGATAAGAGATATAAGAATCAGATCAAAT
CTGGCTAATACACAATTAACAAAAGTTTTAAAAAGTTTGGAAGGCAAGAAAGTTATTAAA
GCCGTCAAATGTGTTAATGCATCCAAGAAAAAAGTTTATATGCTATTTAATTTAGAGCCC
GACAGATCTGTATCTGGTGGTGCGTGGTATCAGGACCAGGATTTTGAATCTGAATTTGTT
GACATTCTGAATCGTCAGTGCTTGAGATTCCTTCAACAAAGAGCCGATAAAATAAAAAAT
AATCCGAGAGGTCCCATAGTTGGCCGTACACAGTCATATGCCACAGCTGCCGAGGTTCAG
AAATACATTACTGACTTAGGTATAAGTAAAGTTAAACTAGAAGTTGAAGACGTTATAACT
ATTCTGAACACATTAGTTTACGACGGGAAAGCTGAAAGTAATGTTTATCCCGACGGAAAC
AGAGTTTACAGGGCTATAGAATCTCTCCTACCTCCTCCAGGTTTAGTGCAGGTACCATGC
GGAGTATGCCCTCTCATACACAAATGCAATTCAACAGGATTAATAACACCTCAAGATTGT
AAATATATGGATGAGTGGCTCGAGCAATAA
Protein sequence:
MAAAVPELTSAELVAAINKLLQQGVFDLYNQGGSLLYRLKNQNSKQAIKGADNEEKVVYN
LIEEAGNKGIWIRDIRIRSNLANTQLTKVLKSLEGKKVIKAVKCVNASKKKVYMLFNLEP
DRSVSGGAWYQDQDFESEFVDILNRQCLRFLQQRADKIKNNPRGPIVGRTQSYATAAEVQ
KYITDLGISKVKLEVEDVITILNTLVYDGKAESNVYPDGNRVYRAIESLLPPPGLVQVPC
GVCPLIHKCNSTGLITPQDCKYMDEWLEQ