| New model in OGS2.0 | DPOGS215105 |
|---|---|
| Genomic Position | scaffold2892:- 17307-19854 |
| See gene structure | |
| CDS Length | 714 |
| Paired RNAseq reads | 189 |
| Single RNAseq reads | 615 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009595 (4e-94) |
| Best Drosophila hit | CstF-50, isoform A (1e-66) |
| Best Human hit | cleavage stimulation factor subunit 1 (2e-47) |
| Best NR hit (blastp) | PREDICTED: similar to CstF-50 CG2261-PA, isoform A isoform 1 [Apis mellifera] (1e-78) |
| Best NR hit (blastx) | PREDICTED: similar to CstF-50 CG2261-PA, isoform A isoform 1 [Apis mellifera] (3e-76) |
| GeneOntology terms | GO:0005848 mRNA cleavage stimulating factor complex GO:0006379 mRNA cleavage |
| InterPro families | IPR001680 WD40 repeat IPR019781 WD40 repeat, subgroup IPR015943 WD40/YVTN repeat-like-containing domain IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR011046 WD40 repeat-like-containing domain |
| Orthology group | ND |
Nucleotide sequence:
ATGAAGGAAACGCCAACTCCGGAAGTAGATACTAGAAATGTCGTGAAGAACAGAGAACTT
CTTTATCGAATGATTATAAGTCAGTTACATTACGATGGTTTCCAACCTATAGCCGCGACT
CTATCAGCCGCTGTACACGCAGACCCACCGTGCCCTCCGAGCGACAGATTATTAAATCTA
ATGATGGTCGGTCTACAACATGAACCGGACCGGAAGGACAGGCTGGCGGCATCCAGCGGG
GCGGAACATCTGCTGGGAACTACCGGCTTCGATCTCGAGTTTGAGATGGACGCGTCCTCG
CTCGCCCCTGAGCCGGCCACGTACGAGACGGCGTATGTGACGTCACACAAGATGTCTTGT
AGGGCCGGAGCGTTCAGCGCCTGTGGTCAGCTGGTGGCTACCGGCAGTGTGGATGCTAGC
ATTAAGATTCTGGACGTGGAGCGGATGTTGGCTAAATCAGCTCCCGAGGAAGTTGATCCC
GGGAGAGAGCAGCAGGGACATCCGGTGATACGAACATTATACGATCACACCGACGAGATA
ACCGCCCTGGATTTCCATCCCCGGGAACAGATCCTGGTATCAGCGTCCCGGGACTGCTGC
ATCAAACTGTTCGACATAACCAAAGCCTCGGCCAAGAAAGCCTATAAGTCCATTACGGTA
AAGGATCTCGCCTGTTCTTCCTTTGGCACTGTATTTGATGAGGGATCCCTTTGA
Protein sequence:
MKETPTPEVDTRNVVKNRELLYRMIISQLHYDGFQPIAATLSAAVHADPPCPPSDRLLNL
MMVGLQHEPDRKDRLAASSGAEHLLGTTGFDLEFEMDASSLAPEPATYETAYVTSHKMSC
RAGAFSACGQLVATGSVDASIKILDVERMLAKSAPEEVDPGREQQGHPVIRTLYDHTDEI
TALDFHPREQILVSASRDCCIKLFDITKASAKKAYKSITVKDLACSSFGTVFDEGSL