New model in OGS2.0 | DPOGS204779  |
---|---|
Genomic Position | scaffold405:- 118375-127380 |
See gene structure | |
CDS Length | 2643 |
Paired RNAseq reads   | 3938 |
Single RNAseq reads   | 11411 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013717 (7e-36) |
Best Drosophila hit   | beta-coatomer protein (5e-155) |
Best Human hit | coatomer subunit beta (0.0) |
Best NR hit (blastp)   | PREDICTED: similar to coatomer subunit beta [Tribolium castaneum] (0.0) |
Best NR hit (blastx)   | PREDICTED: hypothetical protein [Nasonia vitripennis] (0.0) |
GeneOntology terms    | GO:0030903 notochord development GO:0030117 membrane coat GO:0005488 binding GO:0005515 protein binding GO:0016192 vesicle-mediated transport GO:0030126 COPI vesicle coat GO:0006886 intracellular protein transport GO:0005198 structural molecule activity |
InterPro families    | IPR016460 Coatomer, beta subunit IPR016024 Armadillo-type fold IPR011710 Coatomer, beta subunit, C-terminal IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal IPR011989 Armadillo-like helical |
Orthology group | MCL13436 |
Nucleotide sequence:
ATGGGGGGTGTTGAGCAACCATGCTACACTCTCATTAACTTTCCCACTGATACCGAGCCT
TATAGTGAACAGCAGCTGAAGACAGACCTTGAAAAGGGTGATATAAAGAAGAAAATTGAG
GCACTTAAGAAAACCATTGGTATCATCCTGTCCGGAGAAAAGATTCCAGGGTTGCTGATG
ATAATCATCAGGTTTGTGCTGCCGTTACAGGATCACACCATCAAGAAGCTCCTTCTCATC
TTCTGGGAAATTGTTCCCAAGACCACACCGGATGGGAAGTTGTTGCAGGAAATGATACTA
GTCTGTGATGCATACAGAAAGGATCTCCAACACCCCAATGAGTTCCTCCGAGGTTCTACG
TTGAGGTTCCTCTGCAAGTTGAAGGAGCCAGAGCTTCTAGAGCCCCTGATGCCGGCCATC
CGAGCCTGCCTGGAACACAGACATTCATATGTTCGGAGAAATGCTGTGCTCGCAATCTTC
ACCATCTACCGAAACTTCGAGTTCCTGATCCCGGACGCGCCGGAGGTGATCGGCTCGTTC
CTGGAGTCGGAGCAGGACATGTCGTGTAAGAGGAACGCCTTCCTCATGCTGCTGCACGCG
GACCAGGAGACGGCGCTGGCCTACCTCTCGCAGCGCCTCGACCAGGTGCACGGCTTCGGA
GACATCCTGCAGCTCGTCATAGTGGAACTCATATACAAAGTGTGTCACGCCAACCCGGCA
GAGCGGTCTCGTTTCATCCGCACGGTGTACGGGCTACTGAACGCGCCGAGCGCCGCTGTG
CGCTACGAGGCGGCCGGCACGCTGGTCACGCTGTCCACGGCACCCGCCGCCATCAAGGCG
GCGGCGGCGTGCTACATAGACCTGATAGTGAAGGAGAGCGACAACAACGTCAAGCTGATA
GTGGTGGAGAAGCTGTCCGCGCTCAGGGACGTGAGCTGCGACGCCACCTCGCGCGCCCTG
CCCGAGCTGGCCATGGACGTGCTCAGGGTGCTGGCCTCCTCCGACCTGGACGTCCGCAGG
CACACGCTGCATCTCGCTCTGGAGCTGGCCACTCCTCGCCACGCGGACGAGCTGGTGGGC
GCTCTGAGGAAGGAGGCGTCGCGGGCTCAGCTCGCGGATCACGACGACGCGGCCAAGTAC
CGGCAGCTGCTGGTGAGGGCGATGCATCGAGCGGCCATCAAGTTCCCGGAGGTGGCGTGC
TCGGTGGCGCCCGGATTGTTGGAGCTACTAGGGGACGGCGGGGAGGTGGCGGCGCAGGAT
GTGCTCATGTTCACCAGGCACGCGCTGCACGCCTTCCATGACCTGAAACCTGGCATATAC
GCGAAACTACTGGAGAGTCTGGGCAGCATCCGGGTGGGGAAGATCGCGAGGGCCGCCCTG
TGGCTGGTGGCCGAGTTCGCCGACAACGAGGACAACGTGAAGGCGGCCATCGACGTCATC
GCGGCTGCCATGCCGACACACAAAGACAATGAGGAGGACGGCGACAAGGACGGCGCTGAG
GCTCCGCCTAAGGAAAAGGAGAAGGAGGCGCCCACTCGACAGCTGGTCACCAGTGATGGA
GCGTACGTCACGCAGTCCGCCTTCAACCAGCCCAAGACTCCTGTGACTGACAGCGGTCCG
ACGGCGGACGACCTGGAGCACGGCGTGCGCTGCGTGCGCGCCGGCGCAGAGCGACCCGAC
GTGCTCAGCGAGGCGCTCACGGCCGGATCCCGGAAAGCGCTCGCCTCGCTACTGACGCTA
CCACATCGCTCGGCACCGACCCTGCTCCCTGAGGGCTCCCCCGAGCGTCCCGAGGCGTCT
TCTCGTCCGACGTCTGTTCCCATCGAGCGCGGGATATCGTTCACCGCCCTGGCGCCGCTC
GCCGCCGCCGGCAACAGAGACGTGTTCGAGCTGGCCTTGGATAGAGCTTTACAAGGTCGC
ACCAAGCCGGCCAGTGACGACGGCGGTCGTTTGTCCAAGGTGACCCAGCTGACGGGCTTC
TCGGACCCGGTGTACGCGGAGGCGGTCGTGTCCGTCAATCAGTACGACATAGTGCTGGAC
GTGTTCGTCGTCAACCAGACAGACGATACCCTCCAGAACTGTACGGTGGAGTTGGCGACG
CTGGGCGAGCTGCGGCTGGTGGAGCGGCCGGCGGGCATCGTACTGGGGCCGCGGGATTAC
GCCTCCATCAGGGCGCACGTCAAGGTCGCCTCCACAGAGAACGGCATCATCTTCGGAAAC
ATCGTGTACGAGGTGTCCGGCGCGTCCATGGACCGCGGCGTGGTCGTGCTCAACGACATC
CACATAGACATCGTGGACTACATACAGCCCGCCGCCTGCAGCGACGCCGACTTCCGCACC
ATGTGGGCAGAGTTCGAGTGGGAGAACAAGGTGTCCGTGAACACGAACATCACGGAGCTG
AACGAGTACCTGGAGCACCTGCTGGCGTCCACCAACATGAAGTGCCTCACTCCCGATAAG
GCCCTGTCCGGTCAGTGCGGGTTCATGGCGGCCAACCTGTACGCGCGGTCCATATTCGGC
GAGGACGCGCTCGCCAACCTCAGCATCGAGATCCCCATGAACAAACAGAACGCTCCCGTC
GTGGGACACGTGCGGATACGGGCTAAGACACAGGTGAGGACGAACACACACCAGGACAAC
TAG
Protein sequence:
MGGVEQPCYTLINFPTDTEPYSEQQLKTDLEKGDIKKKIEALKKTIGIILSGEKIPGLLM
IIIRFVLPLQDHTIKKLLLIFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFLRGST
LRFLCKLKEPELLEPLMPAIRACLEHRHSYVRRNAVLAIFTIYRNFEFLIPDAPEVIGSF
LESEQDMSCKRNAFLMLLHADQETALAYLSQRLDQVHGFGDILQLVIVELIYKVCHANPA
ERSRFIRTVYGLLNAPSAAVRYEAAGTLVTLSTAPAAIKAAAACYIDLIVKESDNNVKLI
VVEKLSALRDVSCDATSRALPELAMDVLRVLASSDLDVRRHTLHLALELATPRHADELVG
ALRKEASRAQLADHDDAAKYRQLLVRAMHRAAIKFPEVACSVAPGLLELLGDGGEVAAQD
VLMFTRHALHAFHDLKPGIYAKLLESLGSIRVGKIARAALWLVAEFADNEDNVKAAIDVI
AAAMPTHKDNEEDGDKDGAEAPPKEKEKEAPTRQLVTSDGAYVTQSAFNQPKTPVTDSGP
TADDLEHGVRCVRAGAERPDVLSEALTAGSRKALASLLTLPHRSAPTLLPEGSPERPEAS
SRPTSVPIERGISFTALAPLAAAGNRDVFELALDRALQGRTKPASDDGGRLSKVTQLTGF
SDPVYAEAVVSVNQYDIVLDVFVVNQTDDTLQNCTVELATLGELRLVERPAGIVLGPRDY
ASIRAHVKVASTENGIIFGNIVYEVSGASMDRGVVVLNDIHIDIVDYIQPAACSDADFRT
MWAEFEWENKVSVNTNITELNEYLEHLLASTNMKCLTPDKALSGQCGFMAANLYARSIFG
EDALANLSIEIPMNKQNAPVVGHVRIRAKTQVRTNTHQDN