| New model in OGS2.0 | DPOGS204739 |
|---|---|
| Genomic Position | scaffold405:+ 110789-115043 |
| See gene structure | |
| CDS Length | 1128 |
| Paired RNAseq reads | 31965 |
| Single RNAseq reads | 103087 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013700 (2e-132) |
| Best Drosophila hit | upheld, isoform L (2e-105) |
| Best Human hit | troponin T, fast skeletal muscle isoform 2 (6e-08) |
| Best NR hit (blastp) | troponin T transcript variant B [Bombyx mandarina] (3e-164) |
| Best NR hit (blastx) | troponin T transcript variant B [Bombyx mandarina] (1e-133) |
| GeneOntology terms | GO:0048644 muscle organ morphogenesis GO:0030239 myofibril assembly GO:0045214 sarcomere organization GO:0007005 mitochondrion organization GO:0006874 cellular calcium ion homeostasis GO:0046716 muscle cell homeostasis GO:0005865 striated muscle thin filament GO:0005509 calcium ion binding GO:0005523 tropomyosin binding GO:0005861 troponin complex GO:0007498 mesoderm development GO:0030240 skeletal muscle thin filament assembly |
| InterPro families | IPR001978 Troponin |
| Orthology group | MCL14705 |
Nucleotide sequence:
ATGTCTGACGAAGAAGAATACTCTGGCTCCGAGGAGGAGGAAGTAGAAGAAGAAGTCCCG
GAGACGGGCGAGGGAGACCCAGAATTCATTAAGCGTCAAGACCAGAAGCGGTCTGACTTG
GATGAGCAGTTGAAGGAGTACATTAACGAATGGCGCAAACAACGCGCCAAGGAGGAAGAT
GAACTCAAACGTCTTAAGGAGAAGCAGGCCAAGCGCAAGGTATCTCGTGCTGAAGAAGAG
AAGCGCCTCGCACAGAAGAAGAAGGAGGAAGAAGAAAGGAGAGTCCGTGAGATTGAAGAG
AAGAAACAACGTGACATCGAAGAGAAGAGGCAGCGACTCGAAGAAGCCGAAAAGAAACGC
CAGGCTATGCTCCAGGCCATGAAAGATGCCAGCAAGACCGGACCCAACTTCACCATACAA
AAGAAGAGTGACAACTTCGGCCTCAGCAACGCTCAACTCGAGCGCAACAAGACCAAGGAA
CAGCTGGAGGAAGAGAAGAAGATTTCCCTCTCAATCCGTATCAAACCCCTCGCCATCGAA
GGTCTTTCCGTGGACAAACTACGACAGAAGGCCGTCGAGTTGTGGGAGTGCATCATCAAA
CTTGAGACCGAGAAATACGATCTCGAGGAGAGACAGAAGAGACAGGACTACGACTTAAAA
GAGCTCAAAGAAAGACAAAAGCAGCAGCTGAGGCACAAAGCTCTTAAGAAGGGTCTCGAC
CCTGAGGCGTTAACAGGCAAGCACCCTCCTAAAATCCAAGTCGCGTCTAAATATGAGCGA
CGCGTGGACACACGTTCCTACGACGACAAAAAGAAACTGTTCGAGGGTGATCTAGAGAAA
CTGAACAAGGACTTCCTTGAGAAGGTGTGGCAAGAGAGGGCCGACCAGTTCGGTGGCAGG
CAGAAGGCGAGACTGCCCAAGTGGTTCGGTGAGAGACCCGGCAAGAAGAAGGGAGAGCTC
GAGTCCCCCGAGGGTGAGGAAGACGTGAAGGCTGAGGTGGAAGAGGAGGACGAGCCAGTC
TACGAACCTGAACCCGAGGAGGAGGAGGAGGAGGAAGTCGAGGAAGTCGAGGAGGAGGAA
GAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAATAA
Protein sequence:
MSDEEEYSGSEEEEVEEEVPETGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEED
ELKRLKEKQAKRKVSRAEEEKRLAQKKKEEEERRVREIEEKKQRDIEEKRQRLEEAEKKR
QAMLQAMKDASKTGPNFTIQKKSDNFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLAIE
GLSVDKLRQKAVELWECIIKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLD
PEALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERADQFGGR
QKARLPKWFGERPGKKKGELESPEGEEDVKAEVEEEDEPVYEPEPEEEEEEEVEEVEEEE
EEEEEEEEEEEEEEE