| New model in OGS2.0 | DPOGS210287 |
|---|---|
| Genomic Position | scaffold1382:+ 17121-22290 |
| See gene structure | |
| CDS Length | 1386 |
| Paired RNAseq reads | 458 |
| Single RNAseq reads | 1317 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000030 (5e-153) |
| Best Drosophila hit | sarcoglycan alpha (3e-55) |
| Best Human hit | epsilon-sarcoglycan isoform 2 (1e-14) |
| Best NR hit (blastp) | PREDICTED: similar to Sarcoglycan CG7851-PA [Apis mellifera] (3e-73) |
| Best NR hit (blastx) | PREDICTED: similar to Sarcoglycan CG7851-PA [Apis mellifera] (2e-71) |
| GeneOntology terms | GO:0016012 sarcoglycan complex GO:0008307 structural constituent of muscle GO:0005509 calcium ion binding GO:0005515 protein binding |
| InterPro families | IPR008908 Sarcoglycan alphaepsilon IPR006644 Dystroglycan-type cadherin-like IPR015919 Cadherin-like |
| Orthology group | MCL13689 |
Nucleotide sequence:
ATGAGAGCGGTTGTATGTCATGTTTATAATGCTGTCGAAACTGAAATGTTCTCTATACCC
ATCAGTCCTAACTTATTCAACTGGACTTATCAAGAATTTGATCAGCAGTACCGTTTCCAC
GCGTCCTTGATCGGTAAACCTGAATTGCCGATATGGCTTCGTTACATCTACAGCGGGCGA
CATCACTCGGGATTCATTTTTGGCACGCCGCCCCGAAATACTGAATCTCCTATTACGTTA
GAGGTGATAGGGTTGAACCGTCAGGACTATGAAACCCGCCGGGTGCTGTTAACCCTGAAG
GTTCTTCCCAAGGAGAAGATGGCTCGCCACGAGGTCGAGTTCAAGATAGACAATCTTAAT
GTTGAAGATCTTCTCGATGAGCATAGAATGAGCCGTCTGAAGGACATACTACGTACTAAA
CTATGGTTTGAGAGCAGCGAGGATCTGTATCCGACGTTCCTTGCATCAGCTATAGACTTG
GGAGCCAGGCTACCGTTGAAGCCCAGCGATGGAGAAGGTCTGGTGATACGTCTGGGTAGT
TCTCACCCGTTCTCGTCGGAGATGAAACGTCTCAGAGAGGAGGTACGCCCTCTCAGCAGA
CTACCCAGCTGTCCGAGGGAATACAAGAGAACAACCGTGGAGAGACTGTTCAGAGACGCC
GGCTTCACACTGGACTGGTGTAACTTTGAGCTGTACAATACAATATACGGTCCACGGTCC
ACGGATCACTTGGAATACTTAACTGAGATTCCTTCACCCATAAATCGCGTCCGATCTGAA
AGTCGCGAAGTGTGGACGGCGCCTAACAAGCAATCCTTGCCGACGAGGAGTTACGCGAAA
CAATTGACAGCAGCGATAGTGGGACCGTTGATTTTGCTGCTGCTATCGGTAGCAGCACTA
ACCGGTGTGCTGTGCTTCCATTATGCTGCTATAGCGCACAAGTCATCTAACGTTGAAATA
TGCAAATATGGTACTAGCAACACAGAGCAAACTCAATTAGCTGACAACACCAGCACTAAA
AGTTTAGGAATCAGTCCAAGCAGCAGTCTAGCGCGGCCCTACAGTCCTAAATCGACGACA
AACTTAGCCGGCAGCTACAACCGACCTCAACCACCGCCGTACGGGACCCTCCATCATAGG
AAACTGGACAAAACACCCGACAAAAGGTCGCGTTCACTGGAAGAATCATTAAAATTATTA
AACGAAGCCAACATAGCTACGGAGTACGAGAGGAATCCGATCATAGACTACGCCGACAGC
ACGGACGATTACATATCAATAAAACCTGACACTGATTACATTATTAATAAAATGCAAAAC
GATTTGGACGACATAGTGGTTCCTGAACTCGCTAAATACGGCATATCCGGCATAGGACCG
ATTTGA
Protein sequence:
MRAVVCHVYNAVETEMFSIPISPNLFNWTYQEFDQQYRFHASLIGKPELPIWLRYIYSGR
HHSGFIFGTPPRNTESPITLEVIGLNRQDYETRRVLLTLKVLPKEKMARHEVEFKIDNLN
VEDLLDEHRMSRLKDILRTKLWFESSEDLYPTFLASAIDLGARLPLKPSDGEGLVIRLGS
SHPFSSEMKRLREEVRPLSRLPSCPREYKRTTVERLFRDAGFTLDWCNFELYNTIYGPRS
TDHLEYLTEIPSPINRVRSESREVWTAPNKQSLPTRSYAKQLTAAIVGPLILLLLSVAAL
TGVLCFHYAAIAHKSSNVEICKYGTSNTEQTQLADNTSTKSLGISPSSSLARPYSPKSTT
NLAGSYNRPQPPPYGTLHHRKLDKTPDKRSRSLEESLKLLNEANIATEYERNPIIDYADS
TDDYISIKPDTDYIINKMQNDLDDIVVPELAKYGISGIGPI