New model in OGS2.0 | DPOGS206596  |
---|---|
Genomic Position | scaffold2021:- 306-8187 |
See gene structure | |
CDS Length | 1527 |
Paired RNAseq reads   | 12095 |
Single RNAseq reads   | 30218 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | ND |
Best Drosophila hit   | ribosomal protein S19a, isoform C (1e-52) |
Best Human hit | 40S ribosomal protein S19 (5e-42) |
Best NR hit (blastp)   | ribosomal protein S19 [Spodoptera frugiperda] (3e-80) |
Best NR hit (blastx)   | ribosomal protein S19 [Spodoptera frugiperda] (1e-77) |
GeneOntology terms    | GO:0006412 translation GO:0022627 cytosolic small ribosomal subunit GO:0003735 structural constituent of ribosome GO:0005840 ribosome GO:0005811 lipid particle |
InterPro families    | IPR018277 Ribosomal protein S19e, conserved site IPR001266 Ribosomal protein S19e |
Orthology group | MCL10893 |
Nucleotide sequence:
ATGCAAAGTTTTTCCCTCTTTCTTCCGGTTGCCAACACTAAGGCAAGTGCTAAAACAGGA
ACCAAGATGCGTTCCGTCACATTGAAAGATGTTGAACAAGACAAAGTGGTCAAGACAGTT
GCTGCCCACTTGAAAAAGACGGGCAAGGTTAAGGTTCCAGAACACATGGATCTGGTTAAA
ACCGGTCGCTTCAAGGAACTGGCACCTTATGACCCTGACTGGTTCTACGTGAGATGTGCA
GCTGTATTACGTCACATCTACATCAGATCACCAGTCGGCGTGAAGACTGTGACCAAGATC
TTCGGTGGCCGTAAACGTAACGGCATCACACCCTCACACTTCTGCAGATCATCTGGCAGC
ATTGCTCGTAAAGCTCTGCAAGCCCTAGAAGCTCTTAAGCTGGTAGAGAAGATCCCAGAC
GGTGGACGAATCCTCACCGTCCAAGGCAGACGTGACCTTGACAGAATCGCTGCGCAGGTC
CGCCTCAAGGCCAAGCAAGCCGCCAAGCAGAGTGTGATTGTTCTTTATAAAACATTATCA
GTCGAGGTCGGTTCGTTTTGGATTTGCAGTGATGACAAAATGTTAGCGGCTTTAGGATTT
AAAATTAGTTACATTACATTGTTATTTATAATATCGTGCGCTTTGAGTGTTGAACAATAT
GCTCCACCGAGTAGTTCGCTGTACGTGGCAGAGGACCCGCATATTACGAAAAAAGTGACT
GTAATAAATAGACAACTCGGAGAAAATGGAAAGGAAACATCTGAAAGGAAAAAACGTGAA
GCTACAACAGTCCCACCACAGACAGTGGATAGAAATATCAGTACATGGACTTCACATCTC
AACGACAGCCACCAACAGTTAATGGTGCACTGGGTGGGAGAAGGTTCAAATGTTATTATC
TGCCTGGCTAGGGATTCTACATCCAGGGTCAAAGATCTTTCACCATCGGCTTTATATATA
TCCTATGACTATGGAAAGAACTTCACAAATAAGACGGAAAGTTTTCATTTGAGCGACAGT
CCCGATAGCGGTTACGCACAGTTGGATAAGTTCTTCAATCATCCGAAATATCCTGAATTT
TGCGTGTTCGTGGATTCGACTAATAAGAAGCTGTACTACACTCAAGACAACGGCAGGACT
ATAATAAGGTCTGATCTCAACTTCCATCCAAGCGAATTGGCTTTCGATGAGGACATACCC
AATAGATATGTCATATTGGACAAGGTTGATTCCACTAGAAATCTATACATGACTTTCGAT
GGCGGCAAGAACTTCAAATTGATACAGAATTACGTTAAAACGTTCTTCTGGTCTTCGGGA
GTCGGTTATCCTAAAGCTTTTTACGTGGAGCGATGGAAGCCGGGCGGCAACAGCACAGTG
CTGACGGCCAACGATCCCTCGAACATGGTCAACGCCCAGGAACTGTTCGCTGATGCAAAG
GACTTCCAGATCAAAGGAGACTTTATGTTCGCCACGAAACAGTCCAAAGAGGTGAGTAAT
CAACCTTCATGGTATAACAAATGTTAA
Protein sequence:
MQSFSLFLPVANTKASAKTGTKMRSVTLKDVEQDKVVKTVAAHLKKTGKVKVPEHMDLVK
TGRFKELAPYDPDWFYVRCAAVLRHIYIRSPVGVKTVTKIFGGRKRNGITPSHFCRSSGS
IARKALQALEALKLVEKIPDGGRILTVQGRRDLDRIAAQVRLKAKQAAKQSVIVLYKTLS
VEVGSFWICSDDKMLAALGFKISYITLLFIISCALSVEQYAPPSSSLYVAEDPHITKKVT
VINRQLGENGKETSERKKREATTVPPQTVDRNISTWTSHLNDSHQQLMVHWVGEGSNVII
CLARDSTSRVKDLSPSALYISYDYGKNFTNKTESFHLSDSPDSGYAQLDKFFNHPKYPEF
CVFVDSTNKKLYYTQDNGRTIIRSDLNFHPSELAFDEDIPNRYVILDKVDSTRNLYMTFD
GGKNFKLIQNYVKTFFWSSGVGYPKAFYVERWKPGGNSTVLTANDPSNMVNAQELFADAK
DFQIKGDFMFATKQSKEVSNQPSWYNKC