| New model in OGS2.0 | DPOGS201483 |
|---|---|
| Genomic Position | scaffold1023:- 73906-75867 |
| See gene structure | |
| CDS Length | 933 |
| Paired RNAseq reads | 356 |
| Single RNAseq reads | 792 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002671 (7e-130) |
| Best Drosophila hit | Rrp42 (1e-81) |
| Best Human hit | exosome complex exonuclease RRP42 (7e-72) |
| Best NR hit (blastp) | exosc7 protein [Bombyx mori] (2e-132) |
| Best NR hit (blastx) | exosc7 protein [Bombyx mori] (1e-128) |
| GeneOntology terms | GO:0006397 mRNA processing GO:0005634 nucleus GO:0000175 3'-5'-exoribonuclease activity GO:0000176 nuclear exosome (RNase complex) GO:0003723 RNA binding GO:0005737 cytoplasm GO:0005652 nuclear lamina |
| InterPro families | IPR020568 Ribosomal protein S5 domain 2-type fold IPR001247 Exoribonuclease, phosphorolytic domain 1 IPR015847 Exoribonuclease, phosphorolytic domain 2 |
| Orthology group | MCL13628 |
Nucleotide sequence:
ATGGCTGGCCTACTTCTTAGTCCTTCAGAAAAAGTGTACATTTTACACGGAATCGAAGAT
GACTTTCGATCAGATGGTAGATCCAATATTGACTATCGGCCTATGGAACTCGAGACAGAT
GTAGTAAGTCACGCGAGTGGCTCAGCGAGGCTTAGACTGGCTAATACGGACATTCTAGTT
GGGGTAAAAACTGAAATAGATGTACCAAAACCTGATAAACCAAATCAAGGAAAAATCGAT
TTCTTTGTGGATTGTTCTGCAAATGCAACACCAGAATTTGAAGGCCGAGGAGGAGAACAG
CTTGCAAACAACATATCAAATTTGATGCAACGTGCATACCATTCTCAACAAGCATTTGAT
CTGAAACAGTTATGTATACTTGAAGGAAAACAATGTTGGAAACTTTATGTTGACATATTA
ATATTAGAATGTGGTGGGAATCTGTGTGATGCTGTATCTTTAGCGGTGAAGGCGGCATTA
TTTAACACAAGGATACCTTTTGTTAAAGCTGCACTTTTGGATGGTGGGAATGTAGACTTG
CAACTATCAGATGATCCTTATGATAGCAAGTTATTGGAAGTTGGGACTGCCCCACTACTA
GTTACACTGTGTAAAATTGGTGAAAAATGTGTAGTAGATCCGTCAGCTGAAGAGGAGAGT
TGCAGTGTTATTTCCCTGGTTGTTGGTGTAACCGGCAACCCAAAATGCTACTGCAGTAAT
GAAGACGCAAGTAAATTACACGACCATATTTCTAAATGTAGCACTATAGCAATGAATGGA
CCTGGCAGTGTAGCTCCACAGACACTGACTAACGCTATTAAACAAGGAATAAGTGCTGCC
AAGTATTTAGATGAAGCTCTAGGGAAAGCATTGTTAAGAGAAAGACAAGACATTACAAAC
TTTGTAAAACATTCATATGGATTTTTTAAATAA
Protein sequence:
MAGLLLSPSEKVYILHGIEDDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILV
GVKTEIDVPKPDKPNQGKIDFFVDCSANATPEFEGRGGEQLANNISNLMQRAYHSQQAFD
LKQLCILEGKQCWKLYVDILILECGGNLCDAVSLAVKAALFNTRIPFVKAALLDGGNVDL
QLSDDPYDSKLLEVGTAPLLVTLCKIGEKCVVDPSAEEESCSVISLVVGVTGNPKCYCSN
EDASKLHDHISKCSTIAMNGPGSVAPQTLTNAIKQGISAAKYLDEALGKALLRERQDITN
FVKHSYGFFK