New model in OGS2.0 | DPOGS214065  |
---|---|
Genomic Position | scaffold1020:+ 33488-38701 |
See gene structure | |
CDS Length | 1830 |
Paired RNAseq reads   | 602 |
Single RNAseq reads   | 1601 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010559 (0.0) |
Best Drosophila hit   | CG2107 (3e-154) |
Best Human hit | carnitine O-palmitoyltransferase 2, mitochondrial precursor (4e-163) |
Best NR hit (blastp)   | AGAP008907-PA [Anopheles gambiae str. PEST] (0.0) |
Best NR hit (blastx)   | carnitine O-palmitoyltransferase 2, mitochondrial [Culex quinquefasciatus] (0.0) |
GeneOntology terms    | GO:0006810 transport GO:0006635 fatty acid beta-oxidation GO:0006629 lipid metabolic process GO:0005739 mitochondrion GO:0004095 carnitine O-palmitoyltransferase activity GO:0005743 mitochondrial inner membrane GO:0016020 membrane GO:0046320 regulation of fatty acid oxidation GO:0008415 acyltransferase activity GO:0016740 transferase activity GO:0006853 carnitine shuttle GO:0006631 fatty acid metabolic process |
InterPro families   | IPR000542 Acyltransferase ChoActase/COT/CPT |
Orthology group | MCL14043 |
Nucleotide sequence:
ATGCATTTTCAAAAGTCATTGCCACGTCTGCCAATACCAGATTTAAGCAAAAGCCGCGAT
CGTTACCTTAACGCTATCCGGCCCTTACTTGCTAAAGACCAGTATGAAACCGCTGTGAAA
AGAACTGATAAATTTGTAAATAATGAGGGTAAAGAATTACAATCCAAATTAGTTAATAAG
GACAAAATGAACAAGCAAACCAGCTACATATCAGATTATTGGTTTGATCTTTATTTAAGA
GATAGATCAGCTCTACCCATTAACTATAATCCATTGATTGTGTTTCAAAATGATTTAAGA
CCAGATTATAATGACCAGTTATTAAGAACCTCAAATTTATTAGTGAGTGCAGTCAGATTC
ATGATGGCCCTAAGGGAACAAATTCTTGAACCTGAAGTGTATCACTTGCAACCAAAAAAA
AGCAACACTCCTTTATTCAGGACCGTTACTGGTTTGCTTCCAGAGAGCCTATCTTGGTAT
GGAGCCTATTTATTCAAAGCATTCCCCTTGGATATGAGCCAATTTGTTGGTCTGTTTAAT
GCAACCAGAATACCTCTAGTTGGTAAAGATAAAATCTTCAGGGATACAAGTTGTAATCAT
GTTGTGGTACAGAGAAATGGACATTTCTACATCTTTGATGTTGTGGATTCCAATGGTAAC
ATACTGTCACCAACAGAAATCTTAGGAAATATGTCTCAAATAATGGAAGACAAAACACCA
AAGGCTGAATATCCTGTAGGAATATTAACAACCCAAAATAGAGACGTGTGGGCTAAGCAA
AGAATATATTTAGAAGAAAATGGTAATCAAGAAACACTTAAAAAAATTGATTCAGCCATA
TTCAATATTGTGTTAGACGATGAAACTATTGATGACAATAAACACAAAATTTTAACAAAT
TATTTACATGGGGATGGATTGAATAGATGGTTTGATAAATCATTTAGTCTTATCACTACA
AAGGATGGTGTTTCTGGTATAAACTTTGAACATTCTTGGGGAGATGGTGTTGCTGTGCTC
AGATTCTTTGAGGATATTTATAAAGAAACTACAACAAAGCCATTCATAACTCCAGACAGT
AGACCCTCTAAGAACAATATAACTGTCAAAAAAATAGAGTTTAATTTAGATGATAAATCG
AAAAACTTTATTGTTAATGCTAAAAATGAATACAGTGATTGGTGTAACTCATTAAGTATT
GATTATATTTTGTACGAACAACTAACTAAAGAGGCTTGCAAGAAGTTGAAAGTCAGTCCG
GACTGCATAATGCAGCTGGGTTTTCAGGCTGCTTATCATTTGCTGCATGGAAAATATGTG
GGTACTTATGAATCTTGTAGTACATCGGCATTTAAACACGGAAGGACAGAGACTATGAGA
CCTTGCACAGATAAAACAAAGGCGTTCTGCGACCTACTTCATTCTAAGAAGGCATCAGAT
CAAGAGCTGAGGTCATTGATGCAGGAGTGTTCCTTATATCATTCCAACTTAACGAAAGAA
GCAGCTATGGGACAGGGTTTTGACCGACACATGTTTGCACTGATGAAGATAGCCGAAGAG
AACCATATGCCAAGACCTGAAATATTTGATTCCTATGAATACAAGTACTTGAATAAGTCA
ATACTGAGTACCAGCACATTGTCCTCTCCAAGTGTACTGGCTGGTGGTTTTGGTCCCGTT
GTCAAAGAGGGTTTTGGTATTGGGTATTCAGCGTTCGCAGATAAACTAGGTGCAGCTGTA
GCAAGTTACAAACAACACAATAATAGCAGTGAATTTGTACAGGCTCTACAAAAATCATTT
GAGGATATAAGAAAAATTTTGTCCTATTGA
Protein sequence:
MHFQKSLPRLPIPDLSKSRDRYLNAIRPLLAKDQYETAVKRTDKFVNNEGKELQSKLVNK
DKMNKQTSYISDYWFDLYLRDRSALPINYNPLIVFQNDLRPDYNDQLLRTSNLLVSAVRF
MMALREQILEPEVYHLQPKKSNTPLFRTVTGLLPESLSWYGAYLFKAFPLDMSQFVGLFN
ATRIPLVGKDKIFRDTSCNHVVVQRNGHFYIFDVVDSNGNILSPTEILGNMSQIMEDKTP
KAEYPVGILTTQNRDVWAKQRIYLEENGNQETLKKIDSAIFNIVLDDETIDDNKHKILTN
YLHGDGLNRWFDKSFSLITTKDGVSGINFEHSWGDGVAVLRFFEDIYKETTTKPFITPDS
RPSKNNITVKKIEFNLDDKSKNFIVNAKNEYSDWCNSLSIDYILYEQLTKEACKKLKVSP
DCIMQLGFQAAYHLLHGKYVGTYESCSTSAFKHGRTETMRPCTDKTKAFCDLLHSKKASD
QELRSLMQECSLYHSNLTKEAAMGQGFDRHMFALMKIAEENHMPRPEIFDSYEYKYLNKS
ILSTSTLSSPSVLAGGFGPVVKEGFGIGYSAFADKLGAAVASYKQHNNSSEFVQALQKSF
EDIRKILSY