New model in OGS2.0 | DPOGS202629  |
---|---|
Genomic Position | scaffold822:- 19246-36944 |
See gene structure | |
CDS Length | 5961 |
Paired RNAseq reads   | 3302 |
Single RNAseq reads   | 8151 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008314 (9e-155) |
Best Drosophila hit   | XNP, isoform B (1e-125) |
Best Human hit | transcriptional regulator ATRX isoform 2 (2e-108) |
Best NR hit (blastp)   | transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti] (0.0) |
Best NR hit (blastx)   | transcriptional regulator ATRX [Culex quinquefasciatus] (2e-145) |
GeneOntology terms    | GO:0003678 DNA helicase activity GO:0005634 nucleus GO:0016251 general RNA polymerase II transcription factor activity GO:0006350 transcription GO:0004386 helicase activity GO:0003677 DNA binding GO:0005524 ATP binding GO:0007411 axon guidance GO:0008347 glial cell migration GO:0007399 nervous system development GO:0006917 induction of apoptosis GO:0046328 regulation of JNK cascade GO:0051276 chromosome organization GO:0005700 polytene chromosome GO:0000775 chromosome, centromeric region |
InterPro families    | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR000330 SNF2-related |
Orthology group | MCL11796 |
Nucleotide sequence:
ATGGCGGACACGGTTCCTGTTAGCGATGTTCTTAGCGAAGCTATGGAATATTTATCAAAA
CTGGGATCTAACTTGAGAGTTCGATCGGAAAATCTTAAAGAGAAGAGATTGAAGAAAGAG
AAATTAAAGAATTCTCATGCCTTGCAGAAGGCCGCAAGTAAGGTGCTTTTGATATGTGAA
TTGTCGAAGAAGTCTATTGAGAACGTTGAAAGCGGCGTGAAGAAAGTACTAACTCAAATC
GTCGCTAATCAAAGCAACGTTAGTGATGGCGGGAAAATTGCAAGTCGCAAATCGTCATTC
GTTGACAGCAAAGTTAAATATGAATACTTTGATTATAAATCTCGCAAGTTAAAAATTAAA
CAAAAAATTAACTTGGACCATTACACTTCAGTTAAAGTTTTAACTAAACCCATGCCAATG
GATATTCAAGAAAAGTATCCGGTTTATCATGACTGTGAATTGTATCGAAACAGGAAGAAA
CAAACTTGCAAATCGGAGAGCAATCACAAGGACTCATCAGAAACAAAGGAGCTAGACAGT
AATATTCATGTAAAAGGTAACAGTTCTAATATGGAATTACCTAAACAGGATAAAGAAAAT
CATTCAGAACACCCAGAAATTACCAGAAAACTTAGTAATGATGGTAATAAATGTATAAAA
GACCAACCATCCAAAACGAAAGAGAGTAAATCAACTAAAACCAAGAGATTTAAACACATA
AAAGTATTTAATGATAGTTCTGATAGTGAAACCGAAACGCAAAATAAAACTGAAAATGAA
GTCACTTCAACTCAAAATTCAATTGAATGTGATACATCTCACAAAGAGGCAAACAATGAT
ATAGTTAATATTGAAAATGTATCACCTACTGTGGCTCCAGACCCTAGTAGCACGGAACAA
AATGAACATGAGGGAAGCGAATTACACACAAATTCACCAAAAACAAAGGAAAACTGTGAC
ATAGAGAGTAATGCAACCTTGAAAGAAAATGAAAATAAACAAATTGAATCAGATGTAGCA
GAAATTCAAGGCACATCAGTTGATAGTAATATAAGTAGCAATGTAAATATTGAAAACATT
CCGTCACCAAATGATGTGATCAGCTCTAAAACTGATGATCAGTGTAGTGAAGGTGTTGCC
GCTGATAAAACGAATGAAACCAAAAATGTTGATAGCCAGAGTTCAATAATTAAGCCTTTC
ATTAAATGTGTCAATATAAATAAACTATTGAAAGATGATAAGAAGGCATTCCCAACTAAT
AATGATAAGGAAGATAGTCTAATAGAAAATAATATGCAAAAAGACGACATGAGTAGGAAG
AAAAGTAATAATGTGACGGGCTGTGATCGAAATCAAAGAAAACCTTTAAGAGCAGGTAAA
AAATACCAAAGCGAACACATTGCCATGGAAAATGATGATGCTGAATATTGGAGAGAGAAG
CGTAGTGAAGTGAAGAAGTTTGAGCCTAAGGATTTCCATATTAATATTATGAGACTGCCA
GAATTCACCCAAGATTACCTGAAAAGCTACGGCTTGAAAAGAGTTATTCAAAATGGGGAT
ACTGTGTTTGAATTTACAAAAGAGACAGAAAAAAATATCTCTAAAGATGTCCTGAACGTT
AAAAGCTCTCCGTTGAATGAATCAGATTCAGAGAGTGAAGAAAATTTAAAAAATCTGGCG
GAAAATCTTAAAAATGATCTCAACAAGCCTAATAGGGATAATGGAAATCCTGCTTCGAAT
GAAGTTGGTGGAAGTCAAAGCAATCAATGTGTTGGATCTATTGATAATACTGAAAGCAAT
AATCTAGAAGAGAGAAGTAAAACACCTGACGTAATTATTAATAAAAATGATTCCACGTCA
GTAGCACAGGATGAAATTAAATCCTCCTTGCTGAACGATTCAACTGATGATAATAGTCCA
AACAAAAAGAGAAAACGACGTAGCAATAGTGTCTCCCCATCATCGAAACGAAAACACATG
ATGGAGAGCATACACGCTAAGAAAATGTTGCTCACAGACTCGTCCAGCTCGGACACGGAG
GACGAAGCGTTGACGGGTGCTCTAAAACAAATAAGGGATTACCGGTTAACAGGGAACTCG
TCGGGTGACAAGGAAAAGAAGGATAAAAACGAAAACGAGCCATCCGATTCTGACTCGAGT
TCGATATCTTTAAATAAAAGAAAGAGATCGAGAAGCAATAGTGGAGAAAATGTAAAAGAT
AAAGATATGTCAGAGAGTGAATCTAAGAAGACCTCCAGTCAGACAGAGGATAACTGCGAA
GATGTTTCATGTTCGAGTTCCAAAAAGATGGGGCGGTCTAAATCTAATGAAGGTAGCAGC
AGCCAAAATACAGATTCTCAGGATACGTTTGACAAAGACATTGATGGGCTAACAAATTTA
AAGTCTCTTGACAAGAAGCATCGCCGTCGGGAGTCCAATTCGTCGGCCGCGACACAGAAC
ACGAAAAAACACACAAAAATGCCGAAGCCGTGCATCAGCGACGAGACCTTCCTCAAGGCG
GAAAGCAGTTCGGACAACGCGTCTGTTGCAGACAGCGATGGGGGATACGAAGCTGAAGAG
CTTCCGGCTATAACGTTGTCAGGTTTGAACGGAGACGGTGTCATTCACCTCGCCAAAGAC
GACCTGCTTGAAGAGAGCGACTCATCCAGCTCCCACGTTAAAAGCACACAGGACGGTAAA
AAGAATGAATCTGAAGATGGCAATTTAAAATCCAAGTCCCGTCGCAAGCTGGCGATATCT
TCGGATTCCGAAGCCGGTTCCTCTCGCAAGAAGGACAGGGACGTGAAGCTGAGCGACTTC
GAAGACTCCGAAGACGACTCCGAGCCCAAGAAGACTAAGAGGAAGAAGAAGGGCAGCGAC
AGTGACGCCTCGGCCGCCTCCTCCGCGGACGAGAGTAAGAAGAAACGTCGGCGCATAAAA
AACGTCGACGAGAGCGACGGCTCGGGATCGGAGACGGAGAACGAAGGCAGAAATAAACAT
GGCAGAAAAAACATACGGAAGGTCATGAGCAAGAACCAGCTGGAGGAGGCCACCAAGAAA
GCTGCCAAGGAGGAGAAGGAGAGAATCGCTCGGATAGCGGAGAGACAGAAACTGTATAAC
AATTTGGAATTCGATGAGTCGGGGAAGCCGGACGAGGTTGTGTTAGACAAAGTGGTTCTT
GACTTTGATCCGGAGACGAAAGAGCCTTTGATAGAGGTCGATAAAGGACTCGTCAAGAAA
CTGAAGCCGCATCAGGCTAACGGTATAAAGTTTATGTGGAACGCGTGCTTCGAAAGCGTC
AAGAGAATTAAGAAAGACAAAGGCTCCGGCTGCATATTGGCGCATTGTATGGGTCTAGGG
AAGACGTTACAGGTGGTGTCCCTGACTCACACGCTGCTCACTCACAGCTCGCTGACGGGT
GTGAACCGCGTGCTGGTGGTGTGTCCGCTGTCCACCGTCCTCAACTGGGTCAACGAGTTC
CGTATATGGCTGAAACACACCGAGAACGAGTATGACGTCGACGTTTACGAGTTGTCCAGA
TTCAAACAGAACAGCGAGCGCTCGTACCAGCTGTCCTCGTGGTTCGCGAGCGGCGGAGTG
TGTGTGCTGGGCTACGAGATGTTCAGGAACCTGTCCTCAGACACCAACAAGAAGTTCAAG
AAGAAGATGATGAAGAGCTTCCAGGAGAGCCTCGTGGATCCCGGTCCGGACTTGGTGGTG
TGTGACGAGGGACATCTCTTGAAGAATGAGAAGACCAGCCTCTCTCAGGCCATGAACCGT
GTGAGGACGCTCAGACGGATAGTACTCACCGGAACCCCGCTACAGAATAATCTTAAGGAG
TATTACTGCATGGTTCAATTCGTGAAGCCGAATCTGCTGGGGAAGTACAACGAGTACCTC
AATAGATTCGTGAATCCTATAACAAACGGACAGTACACGGACTCCACGGAACATGATATA
AGGGTCATGAAGAGGCGGTCGCATGTGCTGCACAAGATGCTGGACGGAGCTGTGCAGAGG
CGGGACTACGGGGTGCTGGCGCCCTTCCTGCCGCCGAAGCACGAATACGTTCTGTTCATA
ACGCTCACGGAAGTACAGATTAAGTTGTACCAACATTACCTTGATAACTACTCCAGGAAG
CCGCTGGCTGGCAAGTCTTCCGGCTTCCTGTTCCCAGACTTCCAGTCGCTCCAGAGGATA
TGGACGCATCCGCTCGTACTTAAATATAACTCGGAGAGATATGAAATTATGCAACAGAAG
AAGAGGGAGAGAGAGGAAGAAGATTCTGAGATGTCTGACTTTATAGACGACGACTCGACA
CCGGATGAATCATCTACAGAAGAATCGTCTGATAGCTTATCTGATATGAGCGATGACAGT
CGGAAGAAAAGTAAGAAGAAGAAGTCGGGGAAGAAAGGTAAAGGAAAAGATAGCAAGGTG
ACGCGGCGCGGAACACGGGCGAATCCAGTGGAGATGGAAGACGAGCCAGCTGTGCTGGAT
TCAAGGGATCTGAAGACGGAGAACCCGACGGAGTGGTGGATGACGCTGGTCAGCGAGGAC
GAGCTGGACGATATGAGGCACTCGCACAAACTAGTGCTGCTGTTCGATATACTGAGGCAG
TGTGAGGCTATCGGGGATAAACTACTGGTGTTCTCCCAATCTCTGTACTCGTTGGACCTG
ATAGAACATTTCCTGGGCAAGGTGGACGACGCGACGCAGGAGGCGAGAGTTGATGAAAAA
CTAAATGGACATGTCGGTTCCTGGTCCCCCGGGATCGATTACTTCCGGCTGGACGGGTCC
ACGTCCTGTGAAAACAGATCTATATGGTGCAAGAATTTTAACAGGGAAGATAATCCTCGA
GCGAGGTTGTTCCTGATCTCGACTCGTGCCGGCGGCCTGGGCATCAACCTGGTGGCGGCC
AACCGCGTCGTCATATTCGACGTGTCGTGGAACCCCTCGCACGACGTGCAGAGCATATTC
AGAGTGTACCGCTTCGGACAGAAGAAACCCTGCTATATATACCGATTTTTGGCTATGGGC
ACGATGGAGGAGAAGATCTACGAGCGGCAAGTGACGAAACAGGCGATATCGAAACGAGTC
ATAGACGAGCAGCAAATAGACCGGCATTACGCCGAGAACGACCTGGCCGAGCTGTACAAG
TTCGAACCCAACCCGCCGCCCAGGGAGATACCGCCGCTGCCGAAGGACAGGCTGTTCGCT
GAGATGCTCAAGGAGCACGAGGCACAGATCTACAAATATCACGAGCATGACTCCCTTTTA
GAGAACAAGGAAGAGGAGACCCTGACAGAAGAGGAGAGGAAGGCGGCCTGGGAGGACTTC
GAGAACGAGAAGACGCGCCCGCCGCCCGCGCCCTTCAACTATAACATGCACAACGGCATG
ATGCCAGGCCTATTCGCCCAACAACAGCAGCTGGCGTATGCGGCGCTAGCGGCCATGTTG
AGGAAAGAAACGCCCGGAATAAACGACAGTCAGATACGAGACATGCAGACGCTACTATAC
AACTCGAACCCAGCCCTGATGCAGAAAATGGGTGAAATATATAAATACGCTCAGCCGGGC
ATGATGAACCCGGGCATGATGAACCCGGGGATGGTGAATCCAGGCGGCGGTATGGGTGTC
GGTGGCAGCAGCGGCCTGCAATACGAGCCGCCCTGGCAGCGTCAGCAGCAAATGCGCATG
CAACAACTCATGCAGCAACAAAACAAGTTCCCGACTCAAATAATAACTGAACAGATGGGT
GCAAAGTACTACGCAGGGGGTCTCGGCAGCCGCGATCCGGTGGCGATGGCGCTGCAGCAG
CAGAGGGCGAGGGAGATGATGCTGGGCGAGCGGACCCGGCCCCGCGGACGACCGCCCGGC
CGCTCCGCCGCCGGACTCGCGCATGCCACAGCGCACGCCGCAGCCACGCCCACCGACGTC
GTCAACCTCGACTCCGACTAG
Protein sequence:
MADTVPVSDVLSEAMEYLSKLGSNLRVRSENLKEKRLKKEKLKNSHALQKAASKVLLICE
LSKKSIENVESGVKKVLTQIVANQSNVSDGGKIASRKSSFVDSKVKYEYFDYKSRKLKIK
QKINLDHYTSVKVLTKPMPMDIQEKYPVYHDCELYRNRKKQTCKSESNHKDSSETKELDS
NIHVKGNSSNMELPKQDKENHSEHPEITRKLSNDGNKCIKDQPSKTKESKSTKTKRFKHI
KVFNDSSDSETETQNKTENEVTSTQNSIECDTSHKEANNDIVNIENVSPTVAPDPSSTEQ
NEHEGSELHTNSPKTKENCDIESNATLKENENKQIESDVAEIQGTSVDSNISSNVNIENI
PSPNDVISSKTDDQCSEGVAADKTNETKNVDSQSSIIKPFIKCVNINKLLKDDKKAFPTN
NDKEDSLIENNMQKDDMSRKKSNNVTGCDRNQRKPLRAGKKYQSEHIAMENDDAEYWREK
RSEVKKFEPKDFHINIMRLPEFTQDYLKSYGLKRVIQNGDTVFEFTKETEKNISKDVLNV
KSSPLNESDSESEENLKNLAENLKNDLNKPNRDNGNPASNEVGGSQSNQCVGSIDNTESN
NLEERSKTPDVIINKNDSTSVAQDEIKSSLLNDSTDDNSPNKKRKRRSNSVSPSSKRKHM
MESIHAKKMLLTDSSSSDTEDEALTGALKQIRDYRLTGNSSGDKEKKDKNENEPSDSDSS
SISLNKRKRSRSNSGENVKDKDMSESESKKTSSQTEDNCEDVSCSSSKKMGRSKSNEGSS
SQNTDSQDTFDKDIDGLTNLKSLDKKHRRRESNSSAATQNTKKHTKMPKPCISDETFLKA
ESSSDNASVADSDGGYEAEELPAITLSGLNGDGVIHLAKDDLLEESDSSSSHVKSTQDGK
KNESEDGNLKSKSRRKLAISSDSEAGSSRKKDRDVKLSDFEDSEDDSEPKKTKRKKKGSD
SDASAASSADESKKKRRRIKNVDESDGSGSETENEGRNKHGRKNIRKVMSKNQLEEATKK
AAKEEKERIARIAERQKLYNNLEFDESGKPDEVVLDKVVLDFDPETKEPLIEVDKGLVKK
LKPHQANGIKFMWNACFESVKRIKKDKGSGCILAHCMGLGKTLQVVSLTHTLLTHSSLTG
VNRVLVVCPLSTVLNWVNEFRIWLKHTENEYDVDVYELSRFKQNSERSYQLSSWFASGGV
CVLGYEMFRNLSSDTNKKFKKKMMKSFQESLVDPGPDLVVCDEGHLLKNEKTSLSQAMNR
VRTLRRIVLTGTPLQNNLKEYYCMVQFVKPNLLGKYNEYLNRFVNPITNGQYTDSTEHDI
RVMKRRSHVLHKMLDGAVQRRDYGVLAPFLPPKHEYVLFITLTEVQIKLYQHYLDNYSRK
PLAGKSSGFLFPDFQSLQRIWTHPLVLKYNSERYEIMQQKKREREEEDSEMSDFIDDDST
PDESSTEESSDSLSDMSDDSRKKSKKKKSGKKGKGKDSKVTRRGTRANPVEMEDEPAVLD
SRDLKTENPTEWWMTLVSEDELDDMRHSHKLVLLFDILRQCEAIGDKLLVFSQSLYSLDL
IEHFLGKVDDATQEARVDEKLNGHVGSWSPGIDYFRLDGSTSCENRSIWCKNFNREDNPR
ARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDVQSIFRVYRFGQKKPCYIYRFLAMG
TMEEKIYERQVTKQAISKRVIDEQQIDRHYAENDLAELYKFEPNPPPREIPPLPKDRLFA
EMLKEHEAQIYKYHEHDSLLENKEEETLTEEERKAAWEDFENEKTRPPPAPFNYNMHNGM
MPGLFAQQQQLAYAALAAMLRKETPGINDSQIRDMQTLLYNSNPALMQKMGEIYKYAQPG
MMNPGMMNPGMVNPGGGMGVGGSSGLQYEPPWQRQQQMRMQQLMQQQNKFPTQIITEQMG
AKYYAGGLGSRDPVAMALQQQRAREMMLGERTRPRGRPPGRSAAGLAHATAHAAATPTDV
VNLDSD