| New model in OGS2.0 | DPOGS213215 |
|---|---|
| Genomic Position | scaffold2105:+ 7871-9473 |
| See gene structure | |
| CDS Length | 1026 |
| Paired RNAseq reads | 1489 |
| Single RNAseq reads | 5207 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007410 (1e-128) |
| Best Drosophila hit | lark, isoform E (7e-87) |
| Best Human hit | RNA-binding protein 4 isoform 1 (5e-46) |
| Best NR hit (blastp) | RNA-binding protein lark [Bombyx mori] (1e-171) |
| Best NR hit (blastx) | RNA-binding protein lark [Bombyx mori] (2e-145) |
| GeneOntology terms | GO:0009790 embryo development GO:0008062 eclosion rhythm GO:0007623 circadian rhythm GO:0045804 negative regulation of eclosion GO:0003729 mRNA binding GO:0005737 cytoplasm GO:0005634 nucleus GO:0045475 locomotor rhythm GO:0007562 eclosion GO:0040011 locomotion GO:0000166 nucleotide binding GO:0003676 nucleic acid binding GO:0008270 zinc ion binding GO:0030036 actin cytoskeleton organization GO:0048477 oogenesis GO:0003723 RNA binding GO:0007303 cytoplasmic transport, nurse cell to oocyte GO:0008104 protein localization GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR001878 Zinc finger, CCHC-type IPR012677 Nucleotide-binding, alpha-beta plait IPR013084 Zinc finger, CCHC retroviral-type |
| Orthology group | MCL12381 |
Nucleotide sequence:
ATGCCGGGCGCCGGTACTTTCAAAATCTTCGTCGGGAATCTTTCCGATAAAACCACAGAT
GCCGATCTCAGACCGCTGTTCGAAAAGTTCGGTACGGTCGTAGAATGCGATATCGTCAGA
AATTACGGTTTCGTGCACATGGAAAACGAGCAAGTCGGCCGCGAAGCCATTCAGAACCTC
AACGGTGAAGTAGTTCACGGGCAGGCGATCAAAATCGAGGCGGCCAAGAGTAGAAAGGCG
CCGTCGACGCCGACCACTAAAATATTCGTGGGTAACCTAACGGACAAGACGCGCGCGCCC
GAAGTCCGCGAGCTGTTTCAGAAGTTCGGCACGGTAGTGGAGTGCGATATCGTTCGTAAC
TATGGCTTCGTGCACCTGGACGCGTCGGGCGACGTGAACGAGGCGATCAAAGAGCTGAAC
GGCATGATGGTGGACGGGCAGCCCATGAAGGTGCAGCTCTCCACGAGCCGGGTGCGCCAG
CGGCCTGGCATGGGCGACCCCGAGCAATGCTACCGCTGCGGCCGCGGTGGTCATTGGTCC
AAGGAGTGCCCCAAGGCCATGGGCCCCGACCGCAACGGTTTCCGCGATCGAGCGTTCGGC
CGCGACCCCTACCCCCCGCCGCCGCCGCCGCCCTTCCTCCGCGATCGCATGATGGGAGGA
TTTGGGGATCCTTACGATGGTTACTATGACCGAGCTCGGTTTGACTCTGCGCGGGACCTG
TTCGAGCGGAGATACCCCGTGGGAGCTTCGAGGGGTCTGGACATGGCCCCCTCTCGCGCC
CGAGGTGACTTCGTGTCCCCGCCCCTGCGCCGTGAGCCCATGCCGCCCATGCCTTCCCTG
CCGCCCATGAGAAGCAGTATGGGTTCCATGAGGTCCTCGTATGATGCCATGTACAGTCGC
AGGAGTCCACCCAGAGGACCACAGATGTCTAGAGGGATGTATGAAGATTTCAGCCGGGAC
ACATTTGATGACAGAAGGCCGGGGATGCGAGGCCCCTCGCCTTCCAGAAGATACGCGCCC
TACTAG
Protein sequence:
MPGAGTFKIFVGNLSDKTTDADLRPLFEKFGTVVECDIVRNYGFVHMENEQVGREAIQNL
NGEVVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN
YGFVHLDASGDVNEAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS
KECPKAMGPDRNGFRDRAFGRDPYPPPPPPPFLRDRMMGGFGDPYDGYYDRARFDSARDL
FERRYPVGASRGLDMAPSRARGDFVSPPLRREPMPPMPSLPPMRSSMGSMRSSYDAMYSR
RSPPRGPQMSRGMYEDFSRDTFDDRRPGMRGPSPSRRYAPY