| New model in OGS2.0 | DPOGS212619 |
|---|---|
| Genomic Position | scaffold1520:+ 23343-27181 |
| See gene structure | |
| CDS Length | 954 |
| Paired RNAseq reads | 540 |
| Single RNAseq reads | 1416 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005213 (4e-49) |
| Best Drosophila hit | CG2931 (6e-52) |
| Best Human hit | RNA-binding protein 42 (2e-41) |
| Best NR hit (blastp) | PREDICTED: similar to poly(A)-binding protein, putative [Tribolium castaneum] (1e-65) |
| Best NR hit (blastx) | AGAP010200-PA [Anopheles gambiae str. PEST] (4e-56) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL16192 |
Nucleotide sequence:
ATGGACAACTCCAGCAAACTACAACAGATGCAAGATGAAATGTCCAGATTCGAGGCAGAG
ATCTCAGGATCGGATCTATTGGCCATGCGCCCAGTTATAGGTGCGGGAACCTTTGGGGCT
GTACAGCAACAATTAGAGCGGGCTCTGCCTCATCCTCCAGCGATGATGCCACAGTTCGAT
GTCATGGGAGCTCGCTTGATGTACCCGACTGTACCACCACCGCCTCCACCACCATCCATG
ATGGTACCAGCGTCGGTGCAAAGACGTCCCCCTTGTAGTGAAGTATTTCCCCCACATCCA
TTCATAAGACCCGGGATTCCCGGACCCCAAATACCACCACCACCTCCAAAACCACAGCCG
GTAGTGCTCACTGCGGCCCCCAAACTGTACAAACAATCCAAGGAAGACGAAGCCCTGAAA
GACCAACTTGATGGCAAGAAAAGGAAACGAGAACGTCCATTGACTCCTCCCCGAGAGCCT
GAGATAGAGCCATTACCCCCACCACCAATCGTCCACATAGACACCAGTGCACCAAAGGCC
AAAAAAGAGAAAAAACATAGAAAGGTTGTGCGAACAGCCGGTGGTCAGACTTGGGAGGAT
GTGACCTTACTTGACTGGCCCGACGATGACTTCAGGATGTTCTGCGGAGATCTTGGAAAC
GACGTCACTGATGAACTACTGACTAGAACATTTGGCAAGTACAGTTCATTTCAAAGAGCA
AAAGTTATTAGAGACAAGCGGACGAACAAAAGCAAGGGTTTTGGTTTCGTCAGTTTCAAA
GATCCCGGGGACTTCATTAAGGCCATGAAGGAAATGGACGGACGCTACGTTGGTAGTAGA
CCGATAAAGCTAAGGAAGAGCACGTGGAAGAATCGCTCGCTGGATGTAGTGAGGAAGAAA
GAGAAAGAGAAGGCTGCTCTGCTCTCACAACTCATGTCAGGAAATAAAAGTTGA
Protein sequence:
MDNSSKLQQMQDEMSRFEAEISGSDLLAMRPVIGAGTFGAVQQQLERALPHPPAMMPQFD
VMGARLMYPTVPPPPPPPSMMVPASVQRRPPCSEVFPPHPFIRPGIPGPQIPPPPPKPQP
VVLTAAPKLYKQSKEDEALKDQLDGKKRKRERPLTPPREPEIEPLPPPPIVHIDTSAPKA
KKEKKHRKVVRTAGGQTWEDVTLLDWPDDDFRMFCGDLGNDVTDELLTRTFGKYSSFQRA
KVIRDKRTNKSKGFGFVSFKDPGDFIKAMKEMDGRYVGSRPIKLRKSTWKNRSLDVVRKK
EKEKAALLSQLMSGNKS