| New model in OGS2.0 | DPOGS213248 |
|---|---|
| Genomic Position | scaffold285:+ 157146-196587 |
| See gene structure | |
| CDS Length | 1599 |
| Paired RNAseq reads | 381 |
| Single RNAseq reads | 899 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009439 (3e-95) |
| Best Drosophila hit | Sox102F, isoform B (2e-59) |
| Best Human hit | transcription factor SOX-6 isoform 4 (3e-53) |
| Best NR hit (blastp) | PREDICTED: similar to GA10800-PA [Tribolium castaneum] (1e-71) |
| Best NR hit (blastx) | PREDICTED: similar to GA10800-PA [Tribolium castaneum] (2e-69) |
| GeneOntology terms | GO:0045449 regulation of transcription GO:0003700 sequence-specific DNA binding transcription factor activity GO:0005634 nucleus |
| InterPro families | IPR000910 High mobility group, HMG1/HMG2 IPR009071 High mobility group, superfamily |
| Orthology group | MCL18523 |
Nucleotide sequence:
ATGTCATCTAAAAGAAAGTCGCCGCCCTCTAAATTGCAAGAAGGTGCTACCGACACAGAG
AAATCGGAAGCCGGACCCGCAGCACTGGAGTTCTCGGATCACCACGAGTCTGACGACAAC
GAACATCAAAACTTCTACAAGTTCTCACCAAGTTCTTCGCCCAGAACTTCTCTCAGCGAA
GGCGAAACCTACGAAGACGAACAGCCGAGCAAAAAACAACGCTTTGATCAATCATTAGAG
ATGACAAATAATCTTCTAGTCCCATCGTCATTCCTCAGTCTGCATCAAGTCAACGATCTC
CAGGCAAGAAGACGTGGCTCCTCAGAATGCAGCAGTCCCGGCGCTGAAAAAGTGCTGGGA
CTTTGCAATAATAACAATTCATTGCTGAATCACAACAGCGCGTTATCGCTCGCACCTCCG
CATAAGCGGTCTATGGACGATGTACTGAAAAGATTAACGTCCAAAATGAATAATAGTACT
ATAAAAGAAGAGAAGAGGCCCACGCCATCCACAACGCCTGTTAAACAGAACAATGACAGA
CGAGGGGTTCTAGACGCAGCGACACTACAGGCTTTGCAGGCGGGAGAAAGTGTCTTAGAG
AAGGAGAGGCAGCTATCCGAGATGATTTTACAGCTGCAAATGGTTCGAGAGCAGCTGTTA
GCGCAGCAGGAACATAATAAGAATATAGGGACGGTTTCCGCTGAGTTGGAGCTCCAGAGA
CTTCAGCAGGAGCATCTCCGGAGACAGGAGCTGGTACGACGAGGTCACTCCTTGTATCCA
GCTCCTCCACTGGCGCTGCTGCCACTGCTGGAACAGATGCGGCCACAACAACCTCAGCCA
AACGTGGTTCAAACTTCGAACTGGCCGGCCACAGCTCAACTGGCACAACTGACTGCCAGC
GCTCGGTCCCCACCTCCTCAAGATCCTGACGCGCCTCTGAACCTCAGCAAACAACGATCA
CCGTCTCCCATGATGATGCCACGCTATGTACCCTACCCCCCAATGGAGGAACAGTATATG
AAGAAAGACGATGACTTCAACAACGCTTGTAACACATCATCCTGGAATCAATCACCGCCA
GAGGAATCCGAAAAGGCTAAGCTCATTCGTCAACCAAAACGCGATGAGTCTGGAAAACCA
CACATCAAAAGACCAATGAATGCTTTCATGGTTTGGGCAAAGGATGAGCGCCGTAAGATT
TTAAAGGCATGCCCGGATATGCACAACTCTAATATATCTAAGATTTTGGGAGCAAGATGG
AAGGCCATGTCCAACGCCGAGAAGCAGCCCTACTATGAAGAACAATCGAGACTTTCAAAG
CTTCACATGGAAAAGCATCCTGATTATAGGTACCGACCAAGACCCAAACGAACATGCATC
GTCGATGGTAAGAAGATGCGGATATCAGAGTACAAAAACCTGATGCGTACACGCAGGCAA
GAGATGAGGCAACTTTGGTGCAGGGATGGAGGTAGTGAACTTAACTTCCTCCCATCCCTG
TCTAGCCCTGGGCCGTCGAATTCCTCTCCTCCGCCGAACGGGGGCAACTATATGAACCCG
GCATTCTCGCCCCCCCTTAGCCCTGGCGAGGAGGATTGA
Protein sequence:
MSSKRKSPPSKLQEGATDTEKSEAGPAALEFSDHHESDDNEHQNFYKFSPSSSPRTSLSE
GETYEDEQPSKKQRFDQSLEMTNNLLVPSSFLSLHQVNDLQARRRGSSECSSPGAEKVLG
LCNNNNSLLNHNSALSLAPPHKRSMDDVLKRLTSKMNNSTIKEEKRPTPSTTPVKQNNDR
RGVLDAATLQALQAGESVLEKERQLSEMILQLQMVREQLLAQQEHNKNIGTVSAELELQR
LQQEHLRRQELVRRGHSLYPAPPLALLPLLEQMRPQQPQPNVVQTSNWPATAQLAQLTAS
ARSPPPQDPDAPLNLSKQRSPSPMMMPRYVPYPPMEEQYMKKDDDFNNACNTSSWNQSPP
EESEKAKLIRQPKRDESGKPHIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARW
KAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIVDGKKMRISEYKNLMRTRRQ
EMRQLWCRDGGSELNFLPSLSSPGPSNSSPPPNGGNYMNPAFSPPLSPGEED