New model in OGS2.0 | DPOGS216172  |
---|---|
Genomic Position | scaffold3011:- 1053-9713 |
See gene structure | |
CDS Length | 2331 |
Paired RNAseq reads   | 2473 |
Single RNAseq reads   | 5225 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA014157 (0.0) |
Best Drosophila hit   | Rs1 (5e-165) |
Best Human hit | probable ATP-dependent RNA helicase DDX27 (2e-145) |
Best NR hit (blastp)   | PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia vitripennis] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia vitripennis] (6e-172) |
GeneOntology terms    | GO:0003724 RNA helicase activity GO:0042254 ribosome biogenesis GO:0004004 ATP-dependent RNA helicase activity GO:0003676 nucleic acid binding GO:0005524 ATP binding |
InterPro families    | IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR001650 Helicase, C-terminal IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
Orthology group | MCL14046 |
Nucleotide sequence:
ATGGAAGTAGAAGGGCATCCAGGCCTAATCAAAACCATTAATGATGATGAAGAAGTAGAA
GATTTCTCAGAGGAATCTGATGTGGAAGAAGACTATCAGCCCACTAAACAAAAAGTTAAA
AGACAAGCAGATTTTGACCCTTCATTCAAATTTGTGGGTTCCGTTGATGAGTATAATAAG
AGTCCGTGGGATGATCTACATAAATATATCAAGAGAAATGTTAAACAAACATTAGATCAG
AAGATTGAGAAACGACGAGCTGAAGCAAAGGTCAAAGGCAATATTGATGATAGTGAATCA
GAAGGAGAGAAAGATGCTGGCCTGGATGAATTCGAAATATCTGACGATGAACTGAAGAAA
GATGAAATTAAAACAAAAACAAAGAAACTAACCAAAAAACAGATGTTAGAGGAGGAGCTA
AAGAAAGATGAAGGCGAAGGTGCTCGTATTGAGTACGATTCTGACTTCTTTGAAGAACCA
CCGCCGTATGATGAACAAGCCACCTTCTATATGATGAATCTGTCTCGGCCAATGCTGAAG
GCAATCGCATCTCTGAATTATGTGCACCCTACACCCATCCAAGCCGCGACCATACCTATA
GCTTTATTGGGCAAGGATATCTGTGCGTGTGCAGCCACAGGCACAGGCAAGACAGCTGCG
TACATGGTGCCTGTGCTGGAGCGACTTTTGTACAAACCTACTGAAAGACGCACGCGAGTA
CTGGTGCTTGTGCCTACCAGGGAACTTGGAGCTCAGGTACATACAGTTACCCGTCAGCTG
GCACAGTTCACATCAGTTACCATCGGTCTGTCTGTGGGAGGATTGGACGTCAAGTATCAG
GAGAGCGTTCTCCGTCGTCACCCGGACGTGGTGATAGCAACCCCCGGCCGGCTCATTGAT
CACGTACGGAACACTCCGTCATTCGACCTGAACTCCATAGAAGTGCTCATACTCGATGAG
GCTGACAGGATGTTGGACGAGTATTTCGCTGAGCAGATGAAGGAGATCATCCGTCAATGT
TCCCCGAAGCGCCAGACCATGCTGTTCTCAGCCACTATGAGCGACCAGGTCCGAGACCTG
GCGGCCGTCTCACTCAAGAAACCAGTCAAGCTGTTCCTTGACTCCAACAAGGATGTTGCG
TTCAATTTAAGACAGGAGTTTGTTCGTATCCGTAAAGAGCGCGAGTGCGACCGGGAGGCG
ATCCTAGCGGCGCTAGTGTGCCGTACCTTCAAGGATCGGGCCGTCATCTTCGTACAGACT
AAGAAGCAAGCTCACAGACTACACGTGGCGCTGGGACTTTTGGGAATCAAGGTGGCTGAG
CTCCACGGGGCACTAAACCAGCCCCAGCGTTTGGATTCCCTGAAGCGGTTCAGGGAGGAG
CAGGTGGACGTGCTGGTGGCGACGGATGTAGCAGCCCGAGGACTGGACATACCTGGCGTG
AAGACCGTATTGAATTTCACACTTCCAGCAACCATAGAGCACTATATACACAGGGTCGGT
CGTACCGCTCGTGCTGGCCGTGCTGGTGTGTCCGTGTCGCTGGCCGGTGAGGGCGAGCGG
AACCTGGTGAAGACAATAGTACGTCGCGCACGTCGTGCTGTGAAATCTCGCGTCCTGCCC
GCGGACATCGTAGCCAAGTATAGGGACAAACTTGCCAAGCTGGAGCCCGAGATTGCCGCT
ATACTGGACGAGGAATACGCTGACAAACAGCTGAAGAAGATGGAGAAACAGACTAATAAA
CTAGAAAGCGCCATCAAGAACGAGAAAACTGACACTCCTATGGAAGCCCCGCGACAACAC
GACTGGTTCCAGACACCGAAAGAAAAGAGAGAGGAGAAAGAGAGACTAGCACTGACAAAG
CATGTGGGCAAAGCCGAGAAAACACAGAAAGGTAAAGGAAAGAAACGGAAACACGATGAC
GACGACTCCGACGACGGAGAGAAGAAGAAGAAGAAGAGGCAGACGAAGCACGTGAAGGAT
TCAGCAGAAGAGAGAGTTAGGAAGGAAATGGAGAAGGTCGCACTCCTGCAATCGAGAATG
GCGAAACGTCAGAAGAAGCAGAAGAGAATTCGCGCGGTCGAAGACGATGACGAGAGACCA
GCTCAGAGACAGAAACAAGGGAAGAGGAAGAAGCAGACGAACTTCGCGAACGACCTCACT
GATGTATCCAAAGCGTCCACCAAGAAACTGAGATATGACGCCAATAGGGTGCAGAAAGGA
AAACCACTGCAGAACGGAAAGTTCCAGAAGGGCAAAGCGGTTAAGGGCAAGAAGGGCAAG
ACGTTCGGCAAACCGCAAGCACCGAAAAATACGAAAAAGAAAAATAAATAA
Protein sequence:
MEVEGHPGLIKTINDDEEVEDFSEESDVEEDYQPTKQKVKRQADFDPSFKFVGSVDEYNK
SPWDDLHKYIKRNVKQTLDQKIEKRRAEAKVKGNIDDSESEGEKDAGLDEFEISDDELKK
DEIKTKTKKLTKKQMLEEELKKDEGEGARIEYDSDFFEEPPPYDEQATFYMMNLSRPMLK
AIASLNYVHPTPIQAATIPIALLGKDICACAATGTGKTAAYMVPVLERLLYKPTERRTRV
LVLVPTRELGAQVHTVTRQLAQFTSVTIGLSVGGLDVKYQESVLRRHPDVVIATPGRLID
HVRNTPSFDLNSIEVLILDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSDQVRDL
AAVSLKKPVKLFLDSNKDVAFNLRQEFVRIRKERECDREAILAALVCRTFKDRAVIFVQT
KKQAHRLHVALGLLGIKVAELHGALNQPQRLDSLKRFREEQVDVLVATDVAARGLDIPGV
KTVLNFTLPATIEHYIHRVGRTARAGRAGVSVSLAGEGERNLVKTIVRRARRAVKSRVLP
ADIVAKYRDKLAKLEPEIAAILDEEYADKQLKKMEKQTNKLESAIKNEKTDTPMEAPRQH
DWFQTPKEKREEKERLALTKHVGKAEKTQKGKGKKRKHDDDDSDDGEKKKKKRQTKHVKD
SAEERVRKEMEKVALLQSRMAKRQKKQKRIRAVEDDDERPAQRQKQGKRKKQTNFANDLT
DVSKASTKKLRYDANRVQKGKPLQNGKFQKGKAVKGKKGKTFGKPQAPKNTKKKNK