| New model in OGS2.0 | DPOGS201106 |
|---|---|
| Genomic Position | scaffold2061:- 45494-56960 |
| See gene structure | |
| CDS Length | 2448 |
| Paired RNAseq reads | 394 |
| Single RNAseq reads | 961 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013688 (8e-166) |
| Best Drosophila hit | CG3790 (1e-44) |
| Best Human hit | solute carrier family 22 member 5 (3e-31) |
| Best NR hit (blastp) | PREDICTED: similar to CG9317-PA, isoform A [Apis mellifera] (2e-75) |
| Best NR hit (blastx) | PREDICTED: similar to CG9317-PA, isoform A [Apis mellifera] (9e-75) |
| GeneOntology terms | GO:0015226 carnitine transporter activity GO:0016021 integral to membrane GO:0055085 transmembrane transport |
| InterPro families | IPR005828 General substrate transporter IPR016196 Major facilitator superfamily, general substrate transporter IPR020846 Major facilitator superfamily |
| Orthology group | MCL40888 |
Nucleotide sequence:
ATGACCTGGACCCGGGAGTTGGATGAGGCTGCTACCCTGGCGACGAGACAAGGCTACTGG
CACATCATTCTTTTCTATCTTCTATGTGGTCTCGCGGCGATACCTACTTCGTTTTTAGTT
TTCTCCCAGGTGTTCACGAACGCCACACCAGTCCACTGGTGTGCTCCGATACCGGAAATT
GATGAATTGGATCTTCCAGAGGACGTCGTACTGAACCTCACAGTGCCGGGGGTAGATGGA
GTTTACGAGTCCTGTCTCACTTACGACATAGATATAAACGCATTAAATAAAACTCTTAAA
CAAATGACTAACAGATCCAATAACGTACCACAGGGATCAGTACAGAATGTACTTGAAGAT
AAACAGATAGAGTCTGTAGGAGACAGTATATTGATGTTGAGGAAGGGACGTGTGTCCTGT
AAAAATGGTTGGCAATTTCAAAAAGATCTGTACACTAGGACTTTGGTCACGGAGTTTTCG
CTGGTTTGCGACAGAGAGTGGTTACCAAGAACAAGCAACACGCTATTCTGGGTGGGATCT
ATTTTCGGAAACGTATTCTTCGGGTTATTATCTGACAGATACGGGCGCAGACCCACGATT
CTACTCATGATAACCCTGGAGGTGCCGCTAGCTATCGCCGCTTCATTCCCAGGGAATTAT
TGGATGTTCATAGTGTTGAGGGTGGCTGGTGGACTGTTCTTCCCAGCGCTTTACCAGTTA
CCCTTCATATTAGCTTTGGAGCTGATGCCGCCGAAATGGAGAACTTATGCTGGTATCGTA
GTTGGGATGTTGTTTGGAAGTGGTATGTGTCTGCTGGCAGTCCTGGCGTGGCTGTTGAGA
GATTGGTTCTATCTATCGCTCGCCTCCAGTGTTCCCTTCGTCCTTTTGTTTGGATATTAC
TGGCTTATTCCTGAATCACCACGCTGGTTAGTGGGGAGAGGACGTATTGCTGATGCAGAG
AAAGTTCTCAGAGAACTTGCTAGAAGAAATGGTATCCGTTTGGACAGTGGCTTTCTAATA
GAATTACATAAAAAGGTGAAAAACGATGACGACGAAGCACAAATTACAATCTTACGTAAC
GGTCAGGTTTTGTCGCCACAAACGAAGGAATTGAAGCAAAGAAAGAATGAAATGATTGCG
TATAAACCAACAATCATAATAAGTGAAGTACACGAGGAAGATGATAAAACTGACCACATA
GCTGAAGAAGAAACAAGAAATATTAATATTATAAAACTTGCAGACACTAAAAGTGATACA
GAAGAAGAGCTGAGCCCCAACGACAGAAATGAAATCCTACAACCAATTGACAAATCAAAA
ATACATACATTGAGACGAAAATCGATGCAATTGGTGAACAAGATCTTACTGAAAGAAGAG
GAAGAGGATATCTTAGAAAGAAATCGGTTAGATGACCAAAACTCCGAAGGAGATTGCAAG
GCTTCTCCCCTTGATATATTGAAATATCCTAATTTAAGAAGGAAGTTCTTTTTGCTCACT
GTCAATTGGATAGCAATAGGCGTTGTGTACAACGGTCTGAGTTACAATACACCAAACTTG
GGCGTGGACGATTATCTGGCATTCTTTATAGGAGGTTTAGTGGAACTGCCATCATATTTC
ATTGCCTGGAAGTCCATGGAACGGTTCGGGCGGCGGTGGGTGTTGTTCTGCTTTGTCAAC
GTTGGTGGAGTTGCTTGTTTATGTTGTGCGCTAGTGCCAGAAGCCTGGCCGTGGGTGACA
GTGTTTCTGGCGATGCTGGGTCGTCTCTGTGCAGCGGCCTCTTTCTCTGTGTTCTATGTG
CACATAGGTGAACTTCTGCCCACAGTTCTAAGAGCACAGGCTATGGCGTGCGCGTCTTTC
ATAGCCGGAATAGGACTGTTGGCGTGCCCTTATATTGTGTCTTTGGCCTCCTTGTCGAGG
GACCTGCCCTTGGTCATCATGGGCGTGTTGAGTTTGTTTGCGGGAGTCATCACATTATTC
CTCCCGGAAACTCTCAACCAGCCGTTACCCCAGACCCTGGGGGATGGAGAATTGTTCGGT
CGAGATTTTAAAATAGCGACCGCAGCGCCATCTGGCGGGCTGATTTGTGAATCTAAACTA
GCTGAGGCTCCATATAAATGTACACAGAAACGAATCATTCGAATCGGTCCAGCCGTTAAG
GACGAGTTCAGTGACACGAGTACCTATGGGTTATATGTGAACACGGACAGTATGCTGTAT
CTGTCACACTGTCCTGTCGTTCTCGGAGTCCTGATGAGCCTCCTCGATAGTCTTTTCTTC
ATGATACCGTCCAAGGCCGTCCACAATACAGTTCAGAGGTCACCAGCTCTGATTGACCAA
CTCATTTGTAAACAATCGTCGTATGCTAATATATTGTCTTTTACTTTTGGGATCATCCAC
TGGCGTCCTGAGGGTCTAGTGTTGATGGTTTTATACGAAACATTATAA
Protein sequence:
MTWTRELDEAATLATRQGYWHIILFYLLCGLAAIPTSFLVFSQVFTNATPVHWCAPIPEI
DELDLPEDVVLNLTVPGVDGVYESCLTYDIDINALNKTLKQMTNRSNNVPQGSVQNVLED
KQIESVGDSILMLRKGRVSCKNGWQFQKDLYTRTLVTEFSLVCDREWLPRTSNTLFWVGS
IFGNVFFGLLSDRYGRRPTILLMITLEVPLAIAASFPGNYWMFIVLRVAGGLFFPALYQL
PFILALELMPPKWRTYAGIVVGMLFGSGMCLLAVLAWLLRDWFYLSLASSVPFVLLFGYY
WLIPESPRWLVGRGRIADAEKVLRELARRNGIRLDSGFLIELHKKVKNDDDEAQITILRN
GQVLSPQTKELKQRKNEMIAYKPTIIISEVHEEDDKTDHIAEEETRNINIIKLADTKSDT
EEELSPNDRNEILQPIDKSKIHTLRRKSMQLVNKILLKEEEEDILERNRLDDQNSEGDCK
ASPLDILKYPNLRRKFFLLTVNWIAIGVVYNGLSYNTPNLGVDDYLAFFIGGLVELPSYF
IAWKSMERFGRRWVLFCFVNVGGVACLCCALVPEAWPWVTVFLAMLGRLCAAASFSVFYV
HIGELLPTVLRAQAMACASFIAGIGLLACPYIVSLASLSRDLPLVIMGVLSLFAGVITLF
LPETLNQPLPQTLGDGELFGRDFKIATAAPSGGLICESKLAEAPYKCTQKRIIRIGPAVK
DEFSDTSTYGLYVNTDSMLYLSHCPVVLGVLMSLLDSLFFMIPSKAVHNTVQRSPALIDQ
LICKQSSYANILSFTFGIIHWRPEGLVLMVLYETL