| New model in OGS2.0 | DPOGS202675 |
|---|---|
| Genomic Position | scaffold3976:+ 6616-13355 |
| See gene structure | |
| CDS Length | 1383 |
| Paired RNAseq reads | 229 |
| Single RNAseq reads | 786 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000843 (0.0) |
| Best Drosophila hit | CG12344 (8e-161) |
| Best Human hit | glycine receptor subunit alpha-1 isoform 1 precursor (1e-47) |
| Best NR hit (blastp) | AGAP010694-PA [Anopheles gambiae str. PEST] (0.0) |
| Best NR hit (blastx) | AGAP010694-PA [Anopheles gambiae str. PEST] (5e-172) |
| GeneOntology terms | GO:0016935 glycine-gated chloride channel complex GO:0016934 extracellular-glycine-gated chloride channel activity GO:0045211 postsynaptic membrane GO:0006811 ion transport |
| InterPro families | IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006201 Neurotransmitter-gated ion-channel IPR018000 Neurotransmitter-gated ion-channel, conserved site IPR006028 Gamma-aminobutyric acid A receptor |
| Orthology group | MCL16948 |
Nucleotide sequence:
ATGCGCTCACTGTGTCAGTTATGTAATGACGTCACGTCTAAGAGGAATCACACGTTGAAA
CCAAGGGTCGTGTTGCCAGAGAATTATGTTAAAGAGATGCGACCTCCTTCTCGCAAAGGG
GATCCCGTCGTTGTCGAATTCAGTATCTACGTGGTTGACGTTAATTCCATAAACGTTGAG
GACATGGACTTCAGAGTGGATATGTTTATACGACAAACTTGGATCGAAAGCAGACTACAG
TTACCAGAGGACATTTTTGAGGAAGGTGACGATCATGTTACTCTGCCTCCAGAATTCTTC
AACAATCTTTGGCATCCAGACCCTTACTTCCTAAACTCCAAAGTAACGGGAGGAGCTTGC
CATTTTTGTCACGAAACTGCTGAGATAGCCGAATTGACTCATAAATTTTCGTCAGTGACC
TTATACCGAAACCAGACAGTGAGGTATGCGGCCCGAATGCACGCTATCATTGCTTGCCAG
ATGGAATTTCAGCTTTATCCGATGGACATACAATCCTGTCCTATTTACATAGAAAGTTTT
TCCTATAGCAATCAAAAAGTGAGATTCCGCTGGAGTGTGGCAGGTGTGACTATCAATCCA
GAACTCAAGTTATTACAATATCATATCGGTGAACCGCTGCGTCTGGAAGAAACTAACGGT
TACATGATCGATAAGGACGGTAACTACTCCAGACTTGTGGTTTATTTTAGATTTGAACGT
CAAATTGGTCATCATTTAATTCAAACCTTTGCACCTTCCTCCCTTGTCGTGATGTTGTCC
TGGTTTAGCTTTTGGTTGGATCTAGACGCAATACCCGGTCGAGTTACATTGTTAGTTACT
TGCATGTTGACGCTTGTTACAATGTTTACTGGATTGAGAGCCGACATACCGCCAGTGGCG
TATGTAAAGGCATTGGATCTTTGGATGGCGGGCTGTATGATGTTTGTCTTCGCTGCTTTA
GGGGAGTTCGTGGTTGTAAAAGTGTTAGACAAACAATATCAAATGAACAAAACAAAAGCT
CAAGAATCGATGCCTAGAATAATTCCTGTGCGCCTTAATGGTGAAAAGGGATCTTGTGGC
ACTGTCGCTGCTTGGGAGGGAAGCGGAGTTCGATGTAGGAAAGTGGACCTAACCTCTCCG
ACATCACCTCCCGCAACTACCCCGGCTGCACACCAAGTACCAGGAGCAACTGCTCATCTG
GTGGGAGTTGAGAGGCGCCAAAGTATATTACAGGTGGCGTGGCTAGACGCGGACACCGGA
CAAGAAAGAGTTTTATGGCGAGAAATTGACAAGCTTTCGCGGGTTGTGTTCCCGGCATTA
TTTTTATTATTTGTTACAATGTACTGGCCAGTACTGTTATTGAAAACTAAGGCATCTTTG
TAG
Protein sequence:
MRSLCQLCNDVTSKRNHTLKPRVVLPENYVKEMRPPSRKGDPVVVEFSIYVVDVNSINVE
DMDFRVDMFIRQTWIESRLQLPEDIFEEGDDHVTLPPEFFNNLWHPDPYFLNSKVTGGAC
HFCHETAEIAELTHKFSSVTLYRNQTVRYAARMHAIIACQMEFQLYPMDIQSCPIYIESF
SYSNQKVRFRWSVAGVTINPELKLLQYHIGEPLRLEETNGYMIDKDGNYSRLVVYFRFER
QIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRVTLLVTCMLTLVTMFTGLRADIPPVA
YVKALDLWMAGCMMFVFAALGEFVVVKVLDKQYQMNKTKAQESMPRIIPVRLNGEKGSCG
TVAAWEGSGVRCRKVDLTSPTSPPATTPAAHQVPGATAHLVGVERRQSILQVAWLDADTG
QERVLWREIDKLSRVVFPALFLLFVTMYWPVLLLKTKASL