| Genomic Position | scaffold3124:+ 9008-13480 |
|---|---|
| See gene structure | |
| CDS Length | 1170 |
| Paired RNAseq reads | 0 |
| Single RNAseq reads | 7 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | ND |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | endonuclease-reverse transcriptase [Bombyx mori] (6e-85) |
| Best NR hit (blastx) | endonuclease-reverse transcriptase [Bombyx mori] (2e-78) |
| GeneOntology terms | GO:0003723 RNA binding GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication |
| InterPro families | IPR000477 Reverse transcriptase |
| Orthology group | MCL10020 |
Nucleotide sequence:
ATGCCGGATGTCGACCCGGGCGAGGTTGAGGTAGCTCTCAGGCAGCTTAAGAACAACAAG
GCGCCAGGTGATGACGGAATTACAATCAAGCTCCTTAAGGCCGGTGGGACTCCAGTCCTG
AAAAAGCTGGCGAGTCTCTTAATTTCAATAATCCACCAAGGCTTGACGGCACAAGCGTGG
AGCCGGGGTGCGGTGTTTCTGTTCTTTAAGAAAGGCGACAAAACCTTACTGAAGAATTAC
AGACCGATCTCACTCCTGAGTCACATTTACAAGCTGTTCTCGAGAGTAGTCACGAACCAC
CTCACTAGAAAACTCGACGAGTTCCAGCCACCAGAACAAGCCGGGTTTCGAAAAGGCTTC
ATCACCGTAGACCACGTCCATACTGTTCGGCAGATTGTACAAAAAACCGAAGAGTACAAT
CAGCCGCTGTGTCTGGCTTTTGTGGACTACGAGAAAGCCTTCGACTCCATCGAACATTGG
CTGCAGGACCATAAGACCAATCCCATCGAGCTGCGTCGGGGAGTGAGACAGGGGGATGTT
ATATCCCCGAAGCTGTTCACCAACGCACTCGAGGACGTCTTTAAGACTCTGGACTGTGCT
GGACAGGGTATAAACGTGAACGGTAGAAATAACTTCGAGCGAGAAGTCGATCGCAGGGAT
CAGTTGGGTTGGGCAGCATTTAGCAAACTCCGTCGAGTTTTCTCTTTTCCTTTACCGCAA
TGCCTGAAGACAAAAGTGTACAACCAGTGCGTCCTAGCTATTATGACTTATGGTGCTGAA
ATGTGGACATTGACGGTTGGACTGGTCCACAGATTCAAAGTCGCACAGCGGGCTATGGAG
CGGGCTATGCTAGGAGTTTTTTTGAAGGATAAAGTTCGCAATGAGGTCATCCGACAAAAA
ACCAAGGCTGATCGCCCGATGAGCCGCGGTACCAAAGCCCTACTGCGCTCTGCGCAAAGG
GCTTCTGCGGTGATGGTGATTAGGGAGTACCGTACGGTCTCCTGGGCCGCAGCGACAGCC
CTTGCCGGCGACCCGCCTTGGGATCTTGTGGCGTCAGTTCTTGCCGAGGTGTTCGCCTAC
GTCTCGGGTAGGAGGGCACTCGGCGAGAATCCTTCGTCGGAGAAGATCCTGGCGGTAGGC
TGGCAGGGAGAGTCGCGCCTTATGCGGTAG
Protein sequence:
MPDVDPGEVEVALRQLKNNKAPGDDGITIKLLKAGGTPVLKKLASLLISIIHQGLTAQAW
SRGAVFLFFKKGDKTLLKNYRPISLLSHIYKLFSRVVTNHLTRKLDEFQPPEQAGFRKGF
ITVDHVHTVRQIVQKTEEYNQPLCLAFVDYEKAFDSIEHWLQDHKTNPIELRRGVRQGDV
ISPKLFTNALEDVFKTLDCAGQGINVNGRNNFEREVDRRDQLGWAAFSKLRRVFSFPLPQ
CLKTKVYNQCVLAIMTYGAEMWTLTVGLVHRFKVAQRAMERAMLGVFLKDKVRNEVIRQK
TKADRPMSRGTKALLRSAQRASAVMVIREYRTVSWAAATALAGDPPWDLVASVLAEVFAY
VSGRRALGENPSSEKILAVGWQGESRLMR