| New model in OGS2.0 | DPOGS211146 |
|---|---|
| Genomic Position | scaffold230:+ 81655-85185 |
| See gene structure | |
| CDS Length | 3531 |
| Paired RNAseq reads | 3059 |
| Single RNAseq reads | 7555 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003018 (0.0) |
| Best Drosophila hit | RNA polymerase II 140kD subunit (0.0) |
| Best Human hit | DNA-directed RNA polymerase II subunit RPB2 (0.0) |
| Best NR hit (blastp) | AGAP003648-PA [Anopheles gambiae str. PEST] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP003648-PA [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0005665 DNA-directed RNA polymerase II, core complex GO:0003899 DNA-directed RNA polymerase activity GO:0006366 transcription from RNA polymerase II promoter GO:0032549 ribonucleoside binding GO:0003677 DNA binding |
| InterPro families | IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 IPR014724 RNA polymerase Rpb2, OB-fold IPR007644 RNA polymerase, beta subunit, protrusion IPR007642 RNA polymerase Rpb2, domain 2 IPR007641 RNA polymerase Rpb2, domain 7 IPR007646 RNA polymerase Rpb2, domain 4 IPR007645 RNA polymerase Rpb2, domain 3 IPR007647 RNA polymerase Rpb2, domain 5 IPR015712 DNA-directed RNA polymerase, subunit 2 IPR007121 RNA polymerase, beta subunit, conserved site |
| Orthology group | MCL10220 |
Nucleotide sequence:
ATGTATGATACAGAAGATGATCAGTATGAGGAAGAAGAAGTCGAAGATATTTCGTCTGAA
TTATGGCAGGAGGCCTGCTGGATAGTAATAAACGCATATTTCGATGAGAAAGGTCTAGTA
AGGCAACAACTCGATAGTTTCGATGAATTCATACAAATGTCAGTCCAACGAATTGTCGAA
GATTCCCCTCCCATAGAACTGCAAGCTGAAGCTCAACATTCATCCGGTGAAATAGAGACA
CCGCCAAAATACCATTTAAAATTTGATCAAATTTATCTTTCTAAACCAACTCATTGGGAA
AAAGACGGAGCGCCATCCCCTATGATGCCTAATGAAGCTCGCCTACGTAATTTAACTTAC
TCTGCACCTTTGTATGTTGATATAACAAAAACCATAGTCAAAGAAAATGAAGATCCTATT
GAGACGCAACATCAAAAAACGTTTATTGGAAAAATTCCAATTATGCTCAGATCTACATAT
TGTTTACTGAGCAATTTGACTGACCGTGATTTGACTGAGTTAAATGAATGTCCTTTAGAC
CCTGGTGGTTATTTTATTATCAATGGCTCTGAAAAGGTGCTAATTGCTCAAGAAAAAATG
GCTACAAATACTGTGTATGTTTTCAGTATGCAGGGTGGTAAATATGCTTATAAAACTGAG
ATAAGATCTTGCCTTGAACATAGCTCAAGGCCTACATCTACTCTATGGGTTAATATGATG
GCAAGAGGAGGACAGAGTATTAAAAAGTCGGCAATTGGTCAGAGGATTGTGGCTATTGTT
CCATATATCAAACAGGAAATTCCTATCATGATAGTATTTAGAGCATTGGGTTTTGTGGCA
GACAGAGATATTCTAGAACATATCATTTATGACTTTGATGACCCCGAAATGATGGAAATG
GTTAAGCCTTCTTTGGATGAAGCTTTTGTTATTCAAGAACAAAATGTTGCTCTTAGCTTC
ATTGGTGCCAGAGGAGCCCGTCCTGGTGTCACTAAAGAGAGGCGTATCAAATATGCAAGA
GAAATTTTGCAAAAGGAAATGCTGCCTCATGTTGGTGTATCTGATTTTTGTGAAACAAAA
AAAGCATACTTTCTAGGTTACATGGTACATAGATTACTTTTAGCTGCTTTGGGTAGAAGA
GAGTTGGATGACAGAGATCATTATGGAAATAAACGACTTGATTTAGCTGGACCATTATTA
GCATTTCTGTTCAGAGGTCTCTTCAAGAATTTATTAAAAGAAGTAAGAATGTACGCTCAG
AAATTCATTGACAAAGGAAAAGATTTTAATCTGGAATTGGCAATCAAAACAAAAATTATT
ACCGATGGTTTGAGATATTCTTTGGCTACTGGAAATTGGGGTGACCAAAAGAAAGCTCAT
CAGGCAAGAGCCGGAGTATCACAGGTATTGAACAGACTAACCTTTGCCTCTACTTTATCT
CACTTGAGGCGTGTCAACTCCCCAATTGGTCGTGACGGCAAACTAGCAAAACCACGTCAG
TTACACAATACTTTGTGGGGAATGATATGTCCTGCTGAAACACCAGAAGGAGCTGCTGTC
GGTTTGGTCAAGAATTTGGCATTAATGGCTTACATTTCTGTCGGAAGTCAGCCATCTCCC
ATATTAGAGTTCTTGGAAGAGTGGTCTATGGAAAATTTGGAGGAAATAGCTCCATCAGCC
ATTGCAGATGCTACAAAAATTTTCGTTAATGGCTGTTGGGTCGGTATACACAGAGATCCA
GAGCAATTAATGGCTACATTGCGTAAACTCAGACGTCAAATGGACATTATAGTCTCTGAA
GTAAGTATGATCCGAGACATAAGAGATAGAGAAATAAGAATTTATACTGATGCTGGAAGA
ATTTGTAGACCATTACTTATTGTTGAGAATGGATCTTTACTATTGAAGAAGAAACATATT
GATCAATTAAAAGAAAGAGATTATAATAATTATGGTTGGCAGAACTTGGTAGCAAGTGGT
GTCGTTGAATATATTGACACCCTGGAAGAAGAAACTGTAATGATTGCTATGAACCCTGAT
GATTTACAACAAATAAAAGAATATGCTTATTGTACTACATACACTCATTGTGAGATTCAC
CCTGCTATGATATTAGGTGTATGCGCCTCTATTATTCCATTCCCAGATCATAATCAAAGT
CCGAGAAACACTTACCAAAGTGCTATGGGCAAACAAGCTATGGGAGTATATATCACAAAC
TTCCATGTTAGAATGGACACATTAGCTCATGTTCTGTTCTATCCACATAAACCCTTGGTT
ACTACCAGATCTATGGAATATCTTCGCTTCAGAGAGCTGCCAGCTGGAATCAATTCAATT
GTAGCCATTTTATGTTACACTGGATATAATCAAGAGGACAGTGTCATCTTAAACGCTTCA
GCTGTAGAGAGAGGGTTCTTCAGATCAGTGTTCTATCGTTCTTATAAAGACTCGGAATCT
AAGAGAATCGGTGATCAAGAAGAGCAATTTGAAAAACCAACAAGACAGACGTGTCAAGGG
ATGAGGAATGCTTTGTATGACAAATTGGATGATGACGGAATTATTGCTCCGGGTATAAGA
GTTTCTGGAGATGATGTAGTAATTGGAAAAACAATTACGTTACCAGAAAATGACGATGAG
TTGGAAGGCACCACGAAACGCTTCACCAAAAGAGACGCTTCGACATTTTTACGTAACAGT
GAAACTGGAATTGTCGATCAAGTTATGTTAACGTTGAATAGCGAAGGATATAAGTTCTGC
AAAATTAGGGTTAGATCAGTACGCATACCACAGATTGGCGACAAGTTTGCATCACGGCAC
GGACAAAAAGGAACCTGTGGGATCCAATACAGGCAAGAAGACATGCCCTTCACTTGTGAG
GGGATCACTCCAGACATTATTATTAACCCACACGCCATCCCATCCCGTATGACAATTGGT
CACTTGATTGAATGTATTCAGGGGAAAGTGTCATCGAACAAAGGCGAAATAGGTGACGCA
ACACCGTTTAACGACGCTGTTAACGTGCAAAAGATTTCTTCACTTCTACAAGAATATGGT
TATCATCTTAGAGGTAATGAAGTAATGTATAACGGTCACACTGGCAGAAAGATCAACGCC
CAAGTGTTCCTGGGGCCCACGTACTATCAACGGTTGAAGCATATGGTGGACGACAAAATT
CACTCCAGAGCCCGAGGACCAGTACAGATTTTAGTTCGACAGCCCATGGAGGGTAGGGCT
CGGGACGGTGGATTGCGTTTCGGGGAAATGGAGCGTGATTGTCAAATAGCTCACGGAGCC
GCTCAGTTTTTGAGAGAGCGATTGTTCGAGGTTTCAGATCCTTACCGCATACACGTTTGC
AATTTCTGCGGTTTGATAGCAATAGCCAACCTCCGTAACAATACATTCGAATGCAAAGGA
TGCAAAAATAAAACACAGATTTCTCAAGTGAGGCTGCCTTACGCTGCAAAGTTGTTGTTC
CAAGAACTCATGTCTATGAACATCGCCCCCAGACTTATGGTCGTAAATTAA
Protein sequence:
MYDTEDDQYEEEEVEDISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPPIELQAEAQHSSGEIETPPKYHLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMQGGKYAYKTEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKSAIGQRIVAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALSFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQ
KFIDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKKHIDQLKERDYNNYGWQNLVASG
VVEYIDTLEEETVMIAMNPDDLQQIKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQG
MRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE
GITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQEYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVVN