| New model in OGS2.0 | DPOGS203876 |
|---|---|
| Genomic Position | scaffold697:- 22078-22926 |
| See gene structure | |
| CDS Length | 849 |
| Paired RNAseq reads | 936 |
| Single RNAseq reads | 2452 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003833 (4e-120) |
| Best Drosophila hit | nucleolar protein at 60B, isoform D (2e-92) |
| Best Human hit | H/ACA ribonucleoprotein complex subunit 4 isoform 1 (2e-78) |
| Best NR hit (blastp) | AGAP004739-PA [Anopheles gambiae str. PEST] (9e-98) |
| Best NR hit (blastx) | AGAP004739-PA [Anopheles gambiae str. PEST] (1e-93) |
| GeneOntology terms | GO:0005730 nucleolus GO:0042254 ribosome biogenesis GO:0006364 rRNA processing GO:0001522 pseudouridine synthesis GO:0005634 nucleus GO:0004730 pseudouridylate synthase activity GO:0007281 germ cell development GO:0003723 RNA binding GO:0009982 pseudouridine synthase activity |
| InterPro families | IPR015947 Pseudouridine synthase/archaeosine transglycosylase-like IPR020103 Pseudouridine synthase, catalytic domain IPR002478 Pseudouridine synthase/archaeosine transglycosylase IPR004521 Uncharacterised conserved domain CHP00451 |
| Orthology group | MCL14901 |
Nucleotide sequence:
ATGTGCGTACATTTGGGTCTCATGCTCGGAGTTGGAGGACAAATGATTGAATTACGCAGA
GTCCGCTCTGGTATACAGGGGGAGAAGGAGGGCATGGTTACCATGCACGACATATTGGAC
GCTCAATGGGCGTATGAGAACCATAAGGATGAAACCTATTTGAGAAGAGTCATTAAGCCA
TTAGAAGGTCTGCTGGTAGCTCACAAGAGGATCTTTATCAAGGACAGTGCGGTTAACGCA
GTATGTTACGGAGCCAAAGTACTTTTGCCTGGTATCCTAAGATACGAGGATGGTATTGAA
GTCGACCAAGAAATTGTTATAGTAACAACAAAGGGAGAAGCTGTGGCATTGGCTATAGCC
CTTATGACCACGTCCACTATGGCATCCTGTGATCATGGGGTAGCGGCCAAACTGAAACGT
GTTATCATGGAAAGAGACACATACCCTCGCAAATGGGGCTTAGGTCCGAAAGCATCTCAA
AAGAAAATGCTTATCCAGCAAGGGAAATTAGATAAATTTGGAAAACCCAACGAAAACACA
CCGTCCGAATGGTTGAATAGCTATGTAGACTACAAAGCTAAGAAGGACACAGAGAACGGT
GATGCACAGGAAGATGCAGGTAGAAAGAGAACCGCTAGCACAGCGAACGCTGACAACCCG
AATAACTCGACAGAAATCAAGTCGGAGAAAAAGAAGAAAAAGAAAAAACGTGACACCGAC
GTAGAAATGGATAATGAAGCTGATACAACGGTAGACCCGGATCAGACAATAGAAGGGGAT
GAGTCGGTGCGCAAAGAAAAGAAAAAAAAGAAAAAGAAGGATAAAGATCAAGAGAGACAG
GACGAGTAA
Protein sequence:
MCVHLGLMLGVGGQMIELRRVRSGIQGEKEGMVTMHDILDAQWAYENHKDETYLRRVIKP
LEGLLVAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVALAIA
LMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKMLIQQGKLDKFGKPNENT
PSEWLNSYVDYKAKKDTENGDAQEDAGRKRTASTANADNPNNSTEIKSEKKKKKKKRDTD
VEMDNEADTTVDPDQTIEGDESVRKEKKKKKKKDKDQERQDE