| New model in OGS2.0 | DPOGS208586 |
|---|---|
| Genomic Position | scaffold668:+ 42820-45946 |
| See gene structure | |
| CDS Length | 1554 |
| Paired RNAseq reads | 150 |
| Single RNAseq reads | 531 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002556 (0.0) |
| Best Drosophila hit | nicotinic acetylcholine receptor alpha 80B (0.0) |
| Best Human hit | neuronal acetylcholine receptor subunit alpha-6 isoform 1 precursor (6e-114) |
| Best NR hit (blastp) | nicotinic acetylcholine receptor subunit alpha 3 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | nicotinic acetylcholine receptor alpha1 subunit [Heliothis virescens] (0.0) |
| GeneOntology terms | GO:0005892 nicotinic acetylcholine-gated receptor-channel complex GO:0004889 nicotinic acetylcholine-activated cation-selective channel activity GO:0045211 postsynaptic membrane GO:0006811 ion transport |
| InterPro families | IPR018000 Neurotransmitter-gated ion-channel, conserved site IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR002394 Nicotinic acetylcholine receptor IPR006201 Neurotransmitter-gated ion-channel |
| Orthology group | MCL10584 |
Nucleotide sequence:
ATGCGCGCTCGCGCTCTGCCCGCCCGCGCGGCGAGACTGCTGCTGCTGGCGTTACTGCTG
GCAGGCTGTGCTGGTAATCCCGACGCCAAGCGCTTGTATGACGACCTTCTCAGTAATTAC
AACAAGTTAGTTCGGCCCGTTCTTAACGTCAGCGACGCGCTCACCGTACGCATCAAACTC
AAACTCAGTCAGCTCATAGACGTCAATCTCAAAAATCAAATTATGACAACTAATTTGTGG
GTAGAGCAGAGTTGGTATGATTACAAGTTATCTTGGGAGCCTCGTGAGTACGGTGGAGTA
GAGATGCTTCATGTTCCCTCTGATCACATTTGGCGTCCGGATATAGTACTCTACAATAAT
GCGGATGGGAACTTCGAGGTAACTTTAGCTACAAAAGCAACTCTGAACTACACCGGTCGT
GTGGAATGGCGCCCTCCAGCCATCTATAAGTCATCTTGCGAAATTGATGTCGAATATTTT
CCATTCGACCAACAGACATGTATTATGAAGTTTGGGTCTTGGACTTACGACGGCTTTCAG
GTGGACTTACGGCATATTGACGAAGCACGTGGCACAAACGTGGTAGAACTAGGAGTCGAC
CTTAGCGAGTTCTATACATCTGTTGAGTGGGACATCTTAGAAGTACCCGCTGTTAGAAAT
GAAAAGTTCTACACATGTTGTGATGAACCATATTTAGATATAACATTCAACATAACCATG
CGCCGCAAAACTCTCTTCTACACCGTAAATCTTATCATACCTTGTATGGGCATTTCATTC
CTGACAGTTCTCGTTTTCTATTTGCCTTCCGACAGCGGAGAGAAAGTTTCACTTTCTATT
TCCATACTTCTCTCTCTGACCGTGTTCTTTTTACTGTTGGCTGAGATAATTCCTCCAACA
TCACTTGTCGTACCGCTACTTGGGAAATTCGTTCTCTTCACGATGATACTTGACACATTC
AGTATTTGCGTGACAGTGGTAGTGTTGAATGTACACTTCCGGTCACCACAGACACACACC
ATGGCGCCGTGGGTGCGGCGTGTATTCATCCATGTACTGCCAAGACTCTTAGTGATGCGT
CGCCCCCACTACCGCCTTGATCCACATCGCAGTCGATTCGCCGGAGTCGTTGCTAGCGAA
GGTTGGTCACCCATAGTCGGTCCAGTGGGAATGGGACCGACGGGCTCTATGGGACAAATG
GATCTCTCGCCGACACCGGAAGCTTGCCGTGTTCATGACGCTCCTGCGTTGTGTGACGCT
TTGCGACGCTGGCACCGCTGCCCTGAACTACATAAAGCCATTGACGGCATTAATTACATC
GCTGAGCAGACACGCAAAGAAGAAGAATCCACCAGGGTGAAAGAGGACTGGAAGTACGTC
GCTATGGTGTTGGATCGGCTGTTTCTTTGGATATTTACCCTGGCTGTATTAGTAGGATCT
GCCGGGATAATTCTTCAGGCGCCCACGCTATACGACGAGCGCGCACCCATCGATGTGCGT
CTCTCAGAGATCGCCTACGCGGCGGCCAAGCCTCGTCCGCCTCCGCCGCGCTAG
Protein sequence:
MRARALPARAARLLLLALLLAGCAGNPDAKRLYDDLLSNYNKLVRPVLNVSDALTVRIKL
KLSQLIDVNLKNQIMTTNLWVEQSWYDYKLSWEPREYGGVEMLHVPSDHIWRPDIVLYNN
ADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDQQTCIMKFGSWTYDGFQ
VDLRHIDEARGTNVVELGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITM
RRKTLFYTVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPT
SLVVPLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHTMAPWVRRVFIHVLPRLLVMR
RPHYRLDPHRSRFAGVVASEGWSPIVGPVGMGPTGSMGQMDLSPTPEACRVHDAPALCDA
LRRWHRCPELHKAIDGINYIAEQTRKEEESTRVKEDWKYVAMVLDRLFLWIFTLAVLVGS
AGIILQAPTLYDERAPIDVRLSEIAYAAAKPRPPPPR