New model in OGS2.0 | DPOGS201522  |
---|---|
Genomic Position | scaffold993:- 29444-34700 |
See gene structure | |
CDS Length | 1065 |
Paired RNAseq reads   | 2064 |
Single RNAseq reads   | 5694 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002695 (2e-09) |
Best Drosophila hit   | staufen, isoform C (5e-23) |
Best Human hit | double-stranded RNA-binding protein Staufen homolog 2 isoform a (3e-15) |
Best NR hit (blastp)   | staufen [Aedes aegypti] (2e-27) |
Best NR hit (blastx)   | staufen [Aedes aegypti] (3e-21) |
GeneOntology terms    | GO:0007316 pole plasm RNA localization GO:0007315 pole plasm assembly GO:0045450 bicoid mRNA localization GO:0007318 pole plasm protein localization GO:0005938 cell cortex GO:0006403 RNA localization GO:0045179 apical cortex GO:0003730 mRNA 3'-UTR binding GO:0055059 asymmetric neuroblast division GO:0005737 cytoplasm GO:0045180 basal cortex GO:0045177 apical part of cell GO:0048477 oogenesis GO:0046011 regulation of oskar mRNA translation GO:0007317 regulation of pole plasm oskar mRNA localization GO:0003725 double-stranded RNA binding GO:0008298 intracellular mRNA localization GO:0005875 microtubule associated complex GO:0008017 microtubule binding GO:0007017 microtubule-based process GO:0045451 pole plasm oskar mRNA localization GO:0008104 protein localization GO:0019094 pole plasm mRNA localization GO:0003729 mRNA binding GO:0046012 positive regulation of oskar mRNA translation GO:0007616 long-term memory GO:0007400 neuroblast fate determination GO:0045167 asymmetric protein localization involved in cell fate determination GO:0008595 anterior/posterior axis specification, embryo GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly GO:0000932 cytoplasmic mRNA processing body |
InterPro families    | IPR001159 Double-stranded RNA-binding IPR014720 Double-stranded RNA-binding-like |
Orthology group | ND |
Nucleotide sequence:
ATGTTGAACGAAACGATTTTCTTTACTGTTTGCCAAAAAATAATTTATGCGTGTATTGTG
AGCGGATCTATACCGATCGTGAAGCCGGATTATTTAATAATTTGCTGCGATCGTAAGATG
ATGCATCACCCGAACATTCATCATCAGCCGATGTCGGGACACCCGCAGCACATGCCGGCG
CACCAGCCCATGCCCGCCCACCATCAACTGCCGCACCAAATGCACCGGGAGAACAGGCAC
GTAACTCTCACTAGGGTGCCGTTGGGTCCGTCACAGGCGGGCGGTATGGGCGCCCACGCT
CAGCTCGGCGGCATGGGCGTGCATCACGCCCACCATGGGCGACCGCACACCATTCGCGCC
GTACACCATCCGCCCACGCAACACCATAATGTACCAACGCCGACCCGTCTCCGTCGTCCT
TACGGCGGTGGCTACACTCCCGGAGTGGTTCCCTTCACACAGCCGCCGCCGATGCCGCCT
CCTACTACGCAACAAAACCACAATGTGGTATCGGGAGTCAATACCAAAACGCCAACACCG
ACAATCGAAGCCAAAGAGAGTTTAGCGTCCCCCACCGGCACTGAAACTTCCGGTACTGGC
ACTGGCACTGGCAATGGCAATGGCAATGGATCTGGCACCAGCACTGACGCGGATATTGAC
GACAAGGACAAGGCCTCGGTAGAGGCGACCGACTCCGAGACACGCTCGACCGCCTCGGCC
AACAGTAAAGAGAAGACACCAATGTGCTTGGTCAATGAACTTGCCAGGTACAATAAGATT
AAGCATCAGTATCGCCTCACATCAGAGACGGGGCCCGCTCACAAGAAAGTATTCACAGTG
ACACTCAGACTCGGTGACGCTGAGGAATACACAGCTGAGGGGTCTTCAATAAAACGCGCC
CAGCACGCGGCGGCTAGCGCGGCTCTGTCGGGCACACGCTACCCCCCTCCCCCGCCGCGC
GCCCCCCCGCCGCACACACACCACGCACACCACCACAAGCACGCCGGTGACGTACATTAT
ATTATGAACTATATCACACGGCCATTACGGAACCTTTACTCCTAA
Protein sequence:
MLNETIFFTVCQKIIYACIVSGSIPIVKPDYLIICCDRKMMHHPNIHHQPMSGHPQHMPA
HQPMPAHHQLPHQMHRENRHVTLTRVPLGPSQAGGMGAHAQLGGMGVHHAHHGRPHTIRA
VHHPPTQHHNVPTPTRLRRPYGGGYTPGVVPFTQPPPMPPPTTQQNHNVVSGVNTKTPTP
TIEAKESLASPTGTETSGTGTGTGNGNGNGSGTSTDADIDDKDKASVEATDSETRSTASA
NSKEKTPMCLVNELARYNKIKHQYRLTSETGPAHKKVFTVTLRLGDAEEYTAEGSSIKRA
QHAAASAALSGTRYPPPPPRAPPPHTHHAHHHKHAGDVHYIMNYITRPLRNLYS