| New model in OGS2.0 | DPOGS201522 |
|---|---|
| Genomic Position | scaffold993:- 24500-29220 |
| See gene structure | |
| CDS Length | 1353 |
| Paired RNAseq reads | 8154 |
| Single RNAseq reads | 18702 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002695 (2e-69) |
| Best Drosophila hit | staufen, isoform C (1e-16) |
| Best Human hit | double-stranded RNA-binding protein Staufen homolog 1 isoform b (2e-32) |
| Best NR hit (blastp) | staufen [Aedes aegypti] (2e-80) |
| Best NR hit (blastx) | staufen [Aedes aegypti] (6e-56) |
| GeneOntology terms | GO:0005791 rough endoplasmic reticulum GO:0005515 protein binding GO:0008157 protein phosphatase 1 binding GO:0005737 cytoplasm GO:0043025 neuronal cell body GO:0005875 microtubule associated complex GO:0005622 intracellular GO:0003725 double-stranded RNA binding GO:0043005 neuron projection |
| InterPro families | IPR001159 Double-stranded RNA-binding IPR014720 Double-stranded RNA-binding-like |
| Orthology group | MCL11909 |
Nucleotide sequence:
ATGGAGCCCAGTTCCTTATTATATAGGGTGCGTGTAACTGTGGGCGGTCGCTCCTGGGTA
GGCGAGGGGGCGACGCCCCAGGGCGCCCGGCACGACGCCGCAGCCCGAGCGCTCCACGAC
CTGAGATCAGTCGCAGAACATCAGGACAACGACAGCGGTGACGCCGGATCAGATAATATG
TTGAACTCAGACGTTAAATCTCCAGTATCGCTGGTACACGAGTTAGCTCTGAAACGAGAT
CTATCTGTTCAGTTCACCGTCAAGTCTGAGCGGGGACCGCCGCATATGAGGGTGTTCGTG
ACGCTGTGCACGGTCGGCGAGATGGAGACGGAGGGGGAGGGGAACGGCAAGAAGATCTCA
AAGAGGCGAGCGGCCGAGAGGATGCTGGAGGAGATGAGGAGGCGCTGGCCGCCCGCCCTG
CTCAGGACCCGCCCGCCCACAGATAGAAGGAGACACCCGCCCGCCAAGAAGAAGCCCAGG
AACCTTATTAAGGAGGGCGGTGAGGAGGCTGGTTGTGCGAAGTCAAACAACGGCACTCCA
GCGTCCTCGGGCGGTTCAGACAACCCGATATCCCGGCTGGCGGTTGCAAGGAACGCGGCG
AGGGCGCGCTCACCACAGTACCGGGTACTGGAGGAGCGCGGAGTGGCCAGGCGGAGGGAG
TTCCTCGTGCAGTGTGACGCGCCACCGCACTCCGCCACCGGGCTAGGACCCAACAAGAAG
ACGGCGAAGAGACGAGCTGCACACAACGTACTTCTAGCGATGGAGCTGAGTGCGAGCGGA
GATACTATGAACAGCAGTATACAGAGCAACGGAGGAGACGACACCAAGAGTGCTGCGGAC
GGGAAACGGAAGGAGGATATGAACGGTGGCGCCAACAGTGAGGTCCGGCAGCCCGTACCC
GGCGTCATACTGATGGACTACCACACGCGGTCGGGACACCCGCCGCAACCCAACGGTGTG
AGCGAGTCGAGCGCGACCGGCAATGGCGTCCCTGTAGGTGCGGAGTCTGTTCCGGCGGCG
GTGCCCGTCCCAGCGGGGGGAGTCCCCGGGGCCACCAACACGCCCGGCGCCAAGGATCAG
CTGATGTATTTAGCGCAGCTACTGGGCTTCACCGTACAGTTCTCGGACTTCCCCAAGCGT
AATCACGGCGAGTACCTGTCTCTGGTGTCCCTCTCCACGGAGCCCCCCGTCATGTGTCAC
GGGGGCGGCGCCTCCACCGCGCAGTCCCACGAGCAGTGCGCCCGGGCGGCGCTCAGAGCA
CTAGCCCTCATGGGACTCGACGCTCCCACCACCGGGTTGCCGAGCATGTCGGCCGCCAAG
CCCGGTCCGATCAGTAACGGCATCGGGGAGTGA
Protein sequence:
MEPSSLLYRVRVTVGGRSWVGEGATPQGARHDAAARALHDLRSVAEHQDNDSGDAGSDNM
LNSDVKSPVSLVHELALKRDLSVQFTVKSERGPPHMRVFVTLCTVGEMETEGEGNGKKIS
KRRAAERMLEEMRRRWPPALLRTRPPTDRRRHPPAKKKPRNLIKEGGEEAGCAKSNNGTP
ASSGGSDNPISRLAVARNAARARSPQYRVLEERGVARRREFLVQCDAPPHSATGLGPNKK
TAKRRAAHNVLLAMELSASGDTMNSSIQSNGGDDTKSAADGKRKEDMNGGANSEVRQPVP
GVILMDYHTRSGHPPQPNGVSESSATGNGVPVGAESVPAAVPVPAGGVPGATNTPGAKDQ
LMYLAQLLGFTVQFSDFPKRNHGEYLSLVSLSTEPPVMCHGGGASTAQSHEQCARAALRA
LALMGLDAPTTGLPSMSAAKPGPISNGIGE