New model in OGS2.0 | DPOGS209362  |
---|---|
Genomic Position | scaffold151:+ 54788-59354 |
See gene structure | |
CDS Length | 2763 |
Paired RNAseq reads   | 18 |
Single RNAseq reads   | 52 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA005689 (5e-18) |
Best Drosophila hit   | mutagen-sensitive 308 (1e-21) |
Best Human hit | DNA polymerase nu (7e-56) |
Best NR hit (blastp)   | PREDICTED: DNA polymerase nu-like [Macaca mulatta] (1e-84) |
Best NR hit (blastx)   | DNA polymerase nu [Danio rerio] (6e-68) |
GeneOntology terms    | GO:0016740 transferase activity GO:0016779 nucleotidyltransferase activity GO:0006281 DNA repair GO:0005634 nucleus GO:0003677 DNA binding GO:0006260 DNA replication GO:0003887 DNA-directed DNA polymerase activity |
InterPro families    | IPR001098 DNA-directed DNA polymerase, family A, palm domain IPR002298 DNA polymerase A |
Orthology group | MCL21919 |
Nucleotide sequence:
ATGAATTCCATGAAAAATTCTATATACGATGAATACGAGACACAATTATCTCCATTTGGA
CGAAAAGTTATGATATCTTTATTAAAATTTAAAGAAGAACGCAGAAATAACTGCTATAAA
CCTTTTTATCCACCGCCTGTGCCACGTTATCGAAAAAGACAAGTTTTACGGTTTAATAAC
CTCAGTCCTCCAAAATCACAAAAGTCGTACAGCGACCAAGTCGAACAAATAATAAGTATT
GATCACAATATTAAGAATATAGGAGATGAACGAGAATCTCAAACAGATCGCACACAACAC
GTGTCCACGGCCTTTGACTTATTAACACCTGACTTTAAAAGTACATTTATAACAGACGAG
CTCGGCCAGGCGTCCGAACAACAGATCTCTCAACATAATGGAACAGACGATTCCATAGAC
ACGGAGATAGGTTCCGACCAGATGTTTGACGTAGACTTAATGTTTAAATGTGTGGATGGT
AATAATAGCGATGGAAATAAATTACACGCCGACGTGTCTCATGCCGCCGACATCCAACCA
GAAGCGGGTGAACACTCGAAGAGCTCTCACGGCATCCCTAAAGATACAATAAAACGTAAA
AATGTTATCAATATTGAGGGCTCCGAGGAGAAAAGAAATAAAATTGACGATAATGAGAAT
GACAAACAAACGTACCGCAAGGAAAAGTATACGACCACTGTTAGGAATTGGCTGAAGGAG
GTCCGACCGTTACGTGCTGAGGAACAAGGGCGGGTGGGGGGAGAGGGGGAGCAGAAACAC
GCACAGAGGAAGAAGACCAGGGGGATGGTGCAGTCCAGGCTTCAGAACAAGGGAGGGGTC
ATGAGATACGGCAGGCAGGACGGACGAGAGGAGCACACACACGTGGAGGAGCAGGGAACA
GCGGACCGGCTAAACAAGTCAGCCGGGAAAGTTACTAGAGAGAAAAAATCTAAGAAAAAA
TTCGTAGCACCAATCAAGAGCCAGGTTCCCGTTAAAGATATCAAGTATCCCCTTAAAATT
TTCGAAGACGCCAGTTGTAAAGAGTTCGAAGACGCGGACATCGTCAACAAGGAGATTTTC
ATAACTTTAATATTTAGGGACGTATTGGGAAAAACGATGTCCTCCAACCAATTAATATGC
TATGACGCCAAAGCAATTATTAAATATCTATTTAGTTTTGGGAGAGACGTTCAACAGTTT
CAGTTTTTGGATGTCAAGGTCGCCGGACGCCTGGTGAGTCCGGGACAGTGTCCCGAGACC
TTTTCCAATTTGTGTGAGCAAGTGTCCGCGATTCCCCGCTACACCCTCGCCACCGAGTGT
CCCCTTCAGAGAGCAGCCTGGCACGTGACGCTGATGAAGGCGGCGTGGGAGACTCTGAAG
GCTACCATGACAAACGACGGGCTATATGAACTTTTTGTTGGCACTGAGATGAATGTCTTA
CCGATCTTAGCAGACATGGAGCAGAGAGGCGTGTGCGTGGATGTGGACGGACTCGAAGCT
ATGGGAGAGGTGGTGAAGACACGCATGAAGGAAGTGGAGGAGGAGTGTTACCGAGCGGCC
GGGAAGCACTTCCAGATTAACTCCGCGCCGCAGCTCCGAGCGATACTGTACGGAGACTTG
AAACTAGACCAGAAATGTAATATTACAGTACGGAAAACGACTGCCAAGGGAGACAAGTCC
ACCTCCGAGGACGTGCTGCGGTCCCTGATGAAGGTTCACCCCCTGCCGGGTCTGATCCTG
GAGTACCGTCACCTCCACAAGGCGCACTCCACCTTCATCACCGGCATCGCTCATCACGTC
GTGAACGGTGTCGTCAAACCCACTTGGGACCAAACGGCGGCGGTGACGGGTCGCATCTCT
TCCAGCAACCCGAACCTGCAGGCCATTCCTAAGACATTTAACCTGGTCCTGTTTCCGCGG
GACGGCGCCGATCCAGTGCCGCTGAGGTTCCGGTCGGTGTACCAGGGCCGAGCGGGCTGG
CGGCTGGTGGCGGCGGACTTCAAGCAGGTGGAGTGCCGCGTGCTGGCTCACGCCGCTCGG
GATGAGCACCTGGAGCAGGCGCTTAGGAGCGACGACCTGTTCACCGACCTCGCCGCCCGC
TGGTTGGAGAAGCCAGGGCGCGAGGTGAGCGGCAGGGACCGGGAGCGCACCAAGCGGCTG
GTGTACGCCGGCCTGTACGGGGCCGGCGCGCGCACGCTGGCAGACATACTGCAACTGCCA
CAAGGACAGCTGGAGGAGGTCATACACAGCTTTGACAGGACGTTTCCATCTCTGAAGCGT
TTCTGTGAGGGGGTGTGGTCCGAGTGCTCGCGGGACGGAGGCCGAGTGTCGACGGTCGGC
CGGCGGACTCGAACCTTCCCCAACATATCCAGCGACGACGCTGCGATGAGGGCGCAGGCC
CGGCGGCAGGCGGTTAATTTTATTATTCAAGGCTCGGCGGCGGAGCTGTGTAAGCGCGCC
ATGTGTGAGTGCGTGGCTGGTCTGCGGCGGGCCGGGGTCGCGGGCCGCCTGCTGCTGGCC
GTGCACGACGAGCTGGTGTGGGAGGTGGCCGCGGACGAGGTGCCCCGCGCGGCCGTCAGT
GATGTATGCGATATAGATATAATCAAGTGGTCGATGGAGAGCTGCGGCCGGCAGCTGGGT
CTGCAGGTCCCCCTGCCGGTCGCCCTGTACACGGGGCACAGCTGGGGGGACCTGGAGGAA
TACACAAGCGGGGTGGCGTCGGTGTTGACATTTACTACGGAGGCAATAAAAACAAACAAA
TAA
Protein sequence:
MNSMKNSIYDEYETQLSPFGRKVMISLLKFKEERRNNCYKPFYPPPVPRYRKRQVLRFNN
LSPPKSQKSYSDQVEQIISIDHNIKNIGDERESQTDRTQHVSTAFDLLTPDFKSTFITDE
LGQASEQQISQHNGTDDSIDTEIGSDQMFDVDLMFKCVDGNNSDGNKLHADVSHAADIQP
EAGEHSKSSHGIPKDTIKRKNVINIEGSEEKRNKIDDNENDKQTYRKEKYTTTVRNWLKE
VRPLRAEEQGRVGGEGEQKHAQRKKTRGMVQSRLQNKGGVMRYGRQDGREEHTHVEEQGT
ADRLNKSAGKVTREKKSKKKFVAPIKSQVPVKDIKYPLKIFEDASCKEFEDADIVNKEIF
ITLIFRDVLGKTMSSNQLICYDAKAIIKYLFSFGRDVQQFQFLDVKVAGRLVSPGQCPET
FSNLCEQVSAIPRYTLATECPLQRAAWHVTLMKAAWETLKATMTNDGLYELFVGTEMNVL
PILADMEQRGVCVDVDGLEAMGEVVKTRMKEVEEECYRAAGKHFQINSAPQLRAILYGDL
KLDQKCNITVRKTTAKGDKSTSEDVLRSLMKVHPLPGLILEYRHLHKAHSTFITGIAHHV
VNGVVKPTWDQTAAVTGRISSSNPNLQAIPKTFNLVLFPRDGADPVPLRFRSVYQGRAGW
RLVAADFKQVECRVLAHAARDEHLEQALRSDDLFTDLAARWLEKPGREVSGRDRERTKRL
VYAGLYGAGARTLADILQLPQGQLEEVIHSFDRTFPSLKRFCEGVWSECSRDGGRVSTVG
RRTRTFPNISSDDAAMRAQARRQAVNFIIQGSAAELCKRAMCECVAGLRRAGVAGRLLLA
VHDELVWEVAADEVPRAAVSDVCDIDIIKWSMESCGRQLGLQVPLPVALYTGHSWGDLEE
YTSGVASVLTFTTEAIKTNK