New model in OGS2.0 | DPOGS214909  |
---|---|
Genomic Position | scaffold5099:- 11763-13240 |
See gene structure | |
CDS Length | 864 |
Paired RNAseq reads   | 372 |
Single RNAseq reads   | 970 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013891 (4e-105) |
Best Drosophila hit   | pre-mRNA processing factor 38 (1e-92) |
Best Human hit | pre-mRNA-splicing factor 38A (2e-81) |
Best NR hit (blastp)   | hypothetical protein AaeL_AAEL004355 [Aedes aegypti] (4e-104) |
Best NR hit (blastx)   | hypothetical protein AaeL_AAEL004355 [Aedes aegypti] (2e-99) |
GeneOntology terms    | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome GO:0043234 protein complex GO:0005515 protein binding GO:0005634 nucleus GO:0010389 regulation of G2/M transition of mitotic cell cycle |
InterPro families   | IPR005037 PRP38 |
Orthology group | MCL14722 |
Nucleotide sequence:
ATGGCTAACCGTACTGTAAAGGACGCGAAATCAATTCGCGGTACAAATCCCCAATATTTA
ATAGAAAAAATCATAAGATCTCGTATATACGACTCTAAATACTGGAAGGAAGAATGTTTT
GCCTTAACTGCAGAGCTGCTCGTCGACAAAGCTATGGAGCTGCGATATATCGGAGGAGTG
CACGGTGGTTTTATTTATCCAACGCCTTTTTTATGTTTAGTTCTGAAAATGCTACAGATA
CAACCTGAAAAAGATATTGTAGTTGAATTTATTAAAAATGAAGAGTTTAAATATGTTCGT
GCTTTGGGCGCGTTTTATATGAGGATAACCGGTTCATCACTTGATTGTTACAAATATTTG
GAGCCACTTTACAACGACAATAGGAAGTTAAGGCGCCAAAACCGCGAGGGTCAGTTTGAA
ATAGTTCATGTTGATGAGTTCATTGACGAATTACTTCGGGAGGAACGCTTGTGTGATGTG
ATTTTGCCAAGAATACAGAAACGGCATATATTAGAAGAAAACAATGAATTAGAACCTAAG
ATATCCGCTCTTGATGACGATTTGGACGAAGAGATGCCATCAGACGAGGAGCCTGTGGAT
GTTGAAGCCAAAGAAAATAAAAGGGATAAAGATAGACGGGACAGGGATAGAAGAAGAGAC
AGGTCTCGTGATCGCGATCGCCGTGATAAGGATCGCAAAAGGGATCGCTCTAGAAGTAGA
GACAGAGAACGGAGGCGAGAACGAGAGAGAGAAAGAGATAGAGAACGCGAAAGAGAAAGA
GAACGTGCTCGAGATCGCGACAGAGAAAAGGATAGAAGAGATCGTCATGACACAGACAGA
AGAAGAGACAGAGGGAGATATTAG
Protein sequence:
MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELLVDKAMELRYIGGV
HGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRITGSSLDCYKYL
EPLYNDNRKLRRQNREGQFEIVHVDEFIDELLREERLCDVILPRIQKRHILEENNELEPK
ISALDDDLDEEMPSDEEPVDVEAKENKRDKDRRDRDRRRDRSRDRDRRDKDRKRDRSRSR
DRERRRERERERDRERERERERARDRDREKDRRDRHDTDRRRDRGRY