| New model in OGS2.0 | DPOGS215948 |
|---|---|
| Genomic Position | scaffold2568:+ 6209-10953 |
| See gene structure | |
| CDS Length | 2736 |
| Paired RNAseq reads | 677 |
| Single RNAseq reads | 1860 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001854 (7e-78) |
| Best Drosophila hit | CG8414 (5e-38) |
| Best Human hit | nucleolar protein 9 (2e-23) |
| Best NR hit (blastp) | GI20408 [Drosophila mojavensis] (2e-44) |
| Best NR hit (blastx) | PREDICTED: similar to GA21059-PA [Nasonia vitripennis] (2e-43) |
| GeneOntology terms | GO:0005634 nucleus GO:0005575 cellular_component GO:0003674 molecular_function GO:0008150 biological_process |
| InterPro families | IPR010655 Pre-mRNA cleavage complex II Clp1 |
| Orthology group | MCL14630 |
Nucleotide sequence:
ATGGAATTTTTCGAAAAAGCACACGTTGCCTGCAGCAATGCAACATCTTTAAATAATAAG
TCAAAAAAAAATGTTAAGAAACAACTGAAACAAATGTTACATGGCTATAAACAAAGTGAT
ATTCATCTTATAAAGTCATCGGCTCTCGACAAAACAGAGTATGATAGTAATTCTACATCA
GTTAGTGGATATTCAGACTTAAATCTGACCGATTCTGGCGACGATGAACATTCAACTCGG
AAGGAGTTGGTAGAGAGTGTAACAGTAGACGAAAATGATTCCTTGGATAGAAGTGCCAGT
AATACTATACATAAAGTTACTTCATATAAGTCTTCTGAAATTAGTGCTAGCAAGGATAAA
AATTCTATTACTGAAGAATCCGATGATGTCTTTTCACTAGTAGACAGTGAGGCATCTAAT
GCAAATAGTCTGATTAAGTCAGAAAGTGAATCAAACAGTTCAGAACCATTTGACCCAGAT
GGTTTACTGGCTGCAAAAATTATTCAAAGACTTCAAATCAACAATGAAAAGAAAAAAAAC
CTCAAAAGAAAACATGATATTGAATCTAAGAAGCATAAAGTCTCAAAAGTCATTGAAAGT
AAAAGTAAATCTGTAAAAGGTCCCGTCATTCCATCAGTATCTGAAGAAGTTCAACAATTC
TCCGATGACGACTCATCTGTCTGTGCCATAGCTGTAGAAAAAGATTCCTCTGAATTTTCT
CCTCCATATGTTTCTATTTCAGCCGTTGATGTACCACTTCTAAGTTTCACAGATGTTTTA
GGAGATTACAAACATACAACTATAAAAAACATACCATCCCAACAAAAATCTGTAACAGTG
GATGAGTATTCAAATTTTATTGTAGATAAATCTTTGAGCGTTGACGCTAAAGTTGAGACA
GATATTGGAAGTTTGACTCCTGAACCTTCATCGGATAACGAGATTGGTGAAATAGAGGAA
ATAATCAATCTTGACTCAACAACAGAAACGATAGAAACGGATACTCCTATACCAACTAAT
GTACCTTTTGATGATACCATGCAATCGGAACCGTTGAGCGATAAAGAATCTTCAACGGAC
GAGGATTACTACAAGGTTATAGATACATTCAAAATATATTATGGCAACAAATGCTGCATC
ATCATATTGAAACATCCAACAGAATTGTTTGTTCAAGGAAAAGTTGCAATAAAAGTTTTA
GACGGCTCAATTGATATATTCGGTTACACCCCAAAGGACGATACTTGTAAATTATACGCT
CCCTTTTACAGCTACGCTCACAGTATAAAAACTACCGAAGAACCAAATGATTATTATGGG
TTGTTCGGGAAATTAACTGAAGCCGGTCTCTCGGTCGCAGAGGCTGAAGAAATAGTGATT
ACTATTGGGGAACACGATGGAGTCGTACTTTTAAAGCCGCTTGTGAACCAGTGTTTAGAT
TTTGTAGAAAATAATTTTAAAATAACAAACTTGTTTGTAAGATCTGTGAAAAACATTGAA
CCCTTCTTTACAAAAGCAACTGATATTTTAAATTGTTCTCTATTCTCAATAAGGCCAGCT
AGATGCTTCAAAGTCCATCCCAGTTGGAAAGAGGCACTTAAATATTCTCAGGAAAAACAT
AGCCGTGGGATTATTTGTGGCGGCAAAGGTGCTGGAAAATCTACATATTTGAGATACCAA
GTAAATAAATTAATCTCTCAAGGACCAGTTTTAGTTGTGGATCTTGACCCTGGGCAGTCC
GAGTTCACAGTGGCCGGTGGTATATCAGCTACTACCGTGTCCGAACCACTATTAGGGCCA
AGTTTCACACATCTAAAGAAGCCAGACATAATGTTTAATATCGGCATGATAAACACAATG
GACAATGCGAGGCGTTATGTTGCAGCACTGCAGCAATTGTTATCACACTGCCGCAATCAC
AAACCGTACTCCGAAATGCCGTGGATAGTCAACACAATGGGGATGACAAACTTCCTAGGG
CTCAAGTTCATAACACTTATCGTAATATTAACGCAGCCAACGTATCTTCTGCAATACGAA
TCCAAGAATTCTAAACGAAGATTTGAAAGCTTCTTAAGACCTTCCAACGTAAAACTTGTA
TTCCAAGATAATGAAAGCGATCCCTTGTTCAGCAACATCACCTTCCCGGAGCAGTTGAAT
TATAAGTTTGTAGTGGCAGACGAGGCGGATAGCTTCTTGAAAAATGGCTACTCTTTATCA
CCTAGAGACGAAAGATACCTAAATTTCTTGGCCTATTTTGGTCAATTACTAACTGTCCAC
AAACTAAAGAGTTTGCTTGAAATAACGCCTTATCAGGTGAACTTGAAAGATATCAACGTC
GCTACCAACGTGATCGTAATGAAGGAACGTATTACAAAAGTTATCAATGGACAAATCGTG
GCACTGTGTCAGCTGTTGAGACAATGCGACAATAGAGTTTTTACATTAGACGATAAACCA
TTCGTATGTTATGGATACGGTATTGTCCGAGGAGTTGATTGGGATAAGGAGGTTCTATAT
ATAATTACACCATTGGAAGGCGATTTCTTAGCATGTGTGGATACTTTGGTGTATGCAGAC
TGGAGTCCCGAGTTAGTGGGGCTAGAGACATGTCTACCGAATGGCACAAGCATCCCCTAC
CGCACCTACACAAGAAACAAGCATATACAGCTCATGTCCACACCAAAGAGGAGATTCAAT
CCACTTCAGCTTATAAAGATGACAAGGAATGCCTAA
Protein sequence:
MEFFEKAHVACSNATSLNNKSKKNVKKQLKQMLHGYKQSDIHLIKSSALDKTEYDSNSTS
VSGYSDLNLTDSGDDEHSTRKELVESVTVDENDSLDRSASNTIHKVTSYKSSEISASKDK
NSITEESDDVFSLVDSEASNANSLIKSESESNSSEPFDPDGLLAAKIIQRLQINNEKKKN
LKRKHDIESKKHKVSKVIESKSKSVKGPVIPSVSEEVQQFSDDDSSVCAIAVEKDSSEFS
PPYVSISAVDVPLLSFTDVLGDYKHTTIKNIPSQQKSVTVDEYSNFIVDKSLSVDAKVET
DIGSLTPEPSSDNEIGEIEEIINLDSTTETIETDTPIPTNVPFDDTMQSEPLSDKESSTD
EDYYKVIDTFKIYYGNKCCIIILKHPTELFVQGKVAIKVLDGSIDIFGYTPKDDTCKLYA
PFYSYAHSIKTTEEPNDYYGLFGKLTEAGLSVAEAEEIVITIGEHDGVVLLKPLVNQCLD
FVENNFKITNLFVRSVKNIEPFFTKATDILNCSLFSIRPARCFKVHPSWKEALKYSQEKH
SRGIICGGKGAGKSTYLRYQVNKLISQGPVLVVDLDPGQSEFTVAGGISATTVSEPLLGP
SFTHLKKPDIMFNIGMINTMDNARRYVAALQQLLSHCRNHKPYSEMPWIVNTMGMTNFLG
LKFITLIVILTQPTYLLQYESKNSKRRFESFLRPSNVKLVFQDNESDPLFSNITFPEQLN
YKFVVADEADSFLKNGYSLSPRDERYLNFLAYFGQLLTVHKLKSLLEITPYQVNLKDINV
ATNVIVMKERITKVINGQIVALCQLLRQCDNRVFTLDDKPFVCYGYGIVRGVDWDKEVLY
IITPLEGDFLACVDTLVYADWSPELVGLETCLPNGTSIPYRTYTRNKHIQLMSTPKRRFN
PLQLIKMTRNA