| New model in OGS2.0 | DPOGS212016 |
|---|---|
| Genomic Position | scaffold3169:+ 23680-30219 |
| See gene structure | |
| CDS Length | 2358 |
| Paired RNAseq reads | 471 |
| Single RNAseq reads | 1106 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010171 (2e-37) |
| Best Drosophila hit | CG5205 (4e-159) |
| Best Human hit | activating signal cointegrator 1 complex subunit 3 isoform a (3e-154) |
| Best NR hit (blastp) | AGAP001234-PA [Anopheles gambiae str. PEST] (0.0) |
| Best NR hit (blastx) | AGAP001234-PA [Anopheles gambiae str. PEST] (0.0) |
| GeneOntology terms | GO:0003724 RNA helicase activity GO:0004386 helicase activity GO:0005682 U5 snRNP GO:0000398 nuclear mRNA splicing, via spliceosome GO:0030532 small nuclear ribonucleoprotein complex GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0008026 ATP-dependent helicase activity |
| InterPro families | IPR014001 DEAD-like helicase IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL10194 |
Nucleotide sequence:
ATGTTAGAATTGCCTCGTATAACTCGGGCCCTCAGAGCTCATACTCAGCTGGACAAACCT
CGATGTCTGAAACCTGGGAAGGATAACAAAATAATTTTCAAAACGTCAATAGCACAAAAA
AGACATAGAACATACTCAGATATATATGAGTATATAAAGAAAAATGAGCCAAACCAAATC
ATTAATCTATTAGAAAAACTAAAAGAGGCTTGTAAGATGCTCACTGGAGATGTCACAGAT
GATATTATCAATGATGCTGTAGTTTTGACACTCAAAATGTTTCTAGACCAAGATATTGTG
ATGCTTAAACATTTGTCTTCATTAAGACAAATGTTTGGATCTGTGTCATCGGCTAATGCA
AATAAAATTTGTGAGATTGTTACAAACATATCTAATGAAGTTTCTGATGATACTAAACAA
TATATTCAAACTGAGGTCAACGACGAAAATCAGAATGTCAAATTGTGGGGTGAAAGTATC
CAATGTCACTACATTCCATACAAACCTGCGAAGAAACCTCTAGCGAAATTAACCAAAAAA
CCAGCTATGGATAGCAATTTTGTAACGGACTTTTCTATGAAATACACAAACAAGGTTCAA
AATGTACAGCCACAGGTTACTGCTAATAAAACTGAATCAAAATTTGGTAAAGTCTGGTTG
GAAAATAAAGTGAGGGAACTCTATGAGAACTCAAACGGCATATCAAGTGCTGATATTCTG
CAATCAATAATCACATTTTTAAATTCATCACGAACGAATGATGAATTACAAAACGACCTA
TTCGAATTATTGGGCTTTGACAAGTTCGAGTTCATTGAAGGTATACTGCAACATCGTCAA
GAAATAACTGAGAGTTTGAAAGTTCCGCCTCCACAGCCAACTATAGCTGAGATTGCCTCA
CTTCTTCCTGAGAATAAAATGCCCCAGTATTTGTGTCAAGTGTCAGTCCAGTCTGAACAA
GAGAAGATGTTAGCAAAACTCGTCAGAAAAGAAGAGAAGAAAGCAAAGAGTAAGAGATGT
GATGATGAAGAGGAACATGAAATTAATATCGCCCAGTTAAGAGCCAAGAGGATAGCTGAG
CTAACAAAGCCTGTTGTACCGTTTTCTACATCAAAATCAAACCTAGATCCCATACTACAG
AAGATATCTTACTCCCAAACAAAGGTTCAATACCCGAATGTGTACGACTCATCAATCAAT
GCAAAAAATTCAGCTGGTTTTGTATCTGGTTTGAAGTTGATTCTGCCGGAAAATGCTATC
AGGAAGGATAATAAGGAATATGAAGAGGTTGTTATACCCAAAAATGAGCAGGCTCCGTTG
AGTGTTGGAAACAAAAGAGTACCTATCTCAGATCTTGATGAGATCGGCCAAATGGCTTTC
GAGAATATCAAGGAATTAAACCGCATCCAATCTGTTGTGTTCCAAACGGCGTATAACACT
AACGAAAATTTGCTCATTTGCGCCCCCACCGGCGCTGGTAAGACAAACATAGCCCTGCTA
ACTGTAGTTCACCAGCTCAAACAACATATAGAGAATGACGTCATCATGAAGAATAAATTT
AAGATTATCTACATAGCTCCTATGAAGGCACTGGCTTCGGAGATGACGGCCAGTTTTGGC
AAACGTCTTCAAAGTCTTGGCATCACGGTCCGAGAACTCACAGGAGATATGAAACTAACT
AAAGCAGAAGTTCAACAGACGCAGATGATTGTTACGACGCCCGAGAAATGGGATGTTGTT
ACCAGGAAAGGGGCTACGGATACTGAATTGGCGTCAATAGTGAAATTACTCATCATAGAT
GAAGTACATTTACTACACGGAGACAGAGGACCCATAGTGGAGGCTATCGTGGCCAGGACA
TTGAGACAGGTTGAATCAACTCAGAACATGATAAGAATCGTGGGCCTGTCAGCAACGTTA
CCCAACTACGTCGATGTTGCCAGATTCCTCCGTGTGAACCCCAACATTGGTCTATTCTAC
TTCGACTCCCGTTTCCGTCCGGTGCCGCTCGAACAGCAGTTTATAGGAGTGAAGGAAATA
GGTTCCGGCGGGGGAACACACCTGAGACAGATCCAGACAATGAACGAAATATGCTACGAC
AAAGCCTCTGAGATGGTGCAGAAAGGTCACCAAGTAATGGTTTTCGTTCACGCTCGTAAC
GCAACCCATCAGACGGCTATGATTCTGAAAGAGATCGCCCAAAAGAAAGGACACCTCAAG
TATTTTGAGCCCGAGGACTCTGGAGGTTTCTTAAAAGCCAAGAAGTCTATCGGCAGCAGT
CCTAACAAACAATTGGCAGAGCTCTTTTCCGCTGGTTTTGCCTGTCATCACGCTGGGATG
TTGAGAAGCGATAGGTAA
Protein sequence:
MLELPRITRALRAHTQLDKPRCLKPGKDNKIIFKTSIAQKRHRTYSDIYEYIKKNEPNQI
INLLEKLKEACKMLTGDVTDDIINDAVVLTLKMFLDQDIVMLKHLSSLRQMFGSVSSANA
NKICEIVTNISNEVSDDTKQYIQTEVNDENQNVKLWGESIQCHYIPYKPAKKPLAKLTKK
PAMDSNFVTDFSMKYTNKVQNVQPQVTANKTESKFGKVWLENKVRELYENSNGISSADIL
QSIITFLNSSRTNDELQNDLFELLGFDKFEFIEGILQHRQEITESLKVPPPQPTIAEIAS
LLPENKMPQYLCQVSVQSEQEKMLAKLVRKEEKKAKSKRCDDEEEHEINIAQLRAKRIAE
LTKPVVPFSTSKSNLDPILQKISYSQTKVQYPNVYDSSINAKNSAGFVSGLKLILPENAI
RKDNKEYEEVVIPKNEQAPLSVGNKRVPISDLDEIGQMAFENIKELNRIQSVVFQTAYNT
NENLLICAPTGAGKTNIALLTVVHQLKQHIENDVIMKNKFKIIYIAPMKALASEMTASFG
KRLQSLGITVRELTGDMKLTKAEVQQTQMIVTTPEKWDVVTRKGATDTELASIVKLLIID
EVHLLHGDRGPIVEAIVARTLRQVESTQNMIRIVGLSATLPNYVDVARFLRVNPNIGLFY
FDSRFRPVPLEQQFIGVKEIGSGGGTHLRQIQTMNEICYDKASEMVQKGHQVMVFVHARN
ATHQTAMILKEIAQKKGHLKYFEPEDSGGFLKAKKSIGSSPNKQLAELFSAGFACHHAGM
LRSDR