| New model in OGS2.0 | DPOGS216121 |
|---|---|
| Genomic Position | scaffold281:+ 67872-73599 |
| See gene structure | |
| CDS Length | 1602 |
| Paired RNAseq reads | 788 |
| Single RNAseq reads | 1881 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009286 (0.0) |
| Best Drosophila hit | DEAD box protein 45A (4e-130) |
| Best Human hit | probable ATP-dependent RNA helicase DDX49 (4e-109) |
| Best NR hit (blastp) | GK23245 [Drosophila willistoni] (1e-155) |
| Best NR hit (blastx) | GK23245 [Drosophila willistoni] (5e-135) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus |
| InterPro families | IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR001650 Helicase, C-terminal IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif |
| Orthology group | MCL14230 |
Nucleotide sequence:
ATGAATGAAAACGTTGGCAAAGACTTTGAAGAACTGGGTGTGAAGCGGTGGTTGATCAAT
CAATTAATAACTCTTGGCATCAAAACGCCAACACCAATCCAGAAAGGATGCATACCAAAC
ATTCTATCTGGCCAGGATTGTATAGGAGCAGCAAAAACTGGTTCTGGAAAAACCTTTGCC
TTTGCTCTACCTATTCTTCAGAACCTCGCAGAAGACCCATATGGAATATTTGCTTTAGTA
CTAACACCTACACATGAATTGGCATATCAGATAGCAGACCAATTCCTAATTCTGGGTCAG
CCATTGAAGCTTAGAGTATGCATAGTGACGGGAGGTTCAGATCAACTTGAGGAATCATTG
AAATTAGCAAAAAGACCTCACATAGTGGTAGCTATGCCTGGCAGGTTGGCCGATCACATA
TCTGGTTGTGATACATTCAGTTTAAAGAAGATTAAATATTTGGTTCTGGATGAAGCAGAT
CGGTTGTTCAGTGAATCCTTCACCGGTGACCTTGAGACAATATTTGAAGCTCTACCACAA
AAGCGGCAGAATCTTTTATTCTCTGCCACGATCACTGAAGATGTTAAGGAATCAAAGGTG
TTGTCATTGAATAAAGATAATCTATCAACATGGTGCGACACGGATACAACTTTGACAGTA
TCTACTCTGGATCAAAGGTATGTGGTGTGTCCGGCGTATGCCAGGGACGTGTACCTGGTT
CAGACCCTGAGGAAGTACAGGGAGGGAGCTCCCAGTTCACACGTCATCGTATTCACCGAT
ACAAAGAAAGAATGCCAAGTCCTCTCAATGATGCTAGCAGACATCGGAATGGACAACGTC
TGTCTGCACGGGTTCATGCGACAAAAAGAACGCGTGTCTGCGCTAGCCCAGTTCAGAAGT
AATCTTAAGTGTACACTGATCGCTACTAACGTCGCTGCCAGGGGATTGGACATACCCTCC
GTGGATTTGGTAGTTAATCATAAACTGCCGTTGGAGCCTAAGGAGTATATACACAGGGTA
GGACGGACAGCCCGAGCTGGTAGAAGCGGTATGGCGATATCGATTATAACCCCATACGAC
ATATTGAGGCTCGGAGAAATAGAAGACGAGATCCGAACCAAACTCAGTGAATATAAAATC
GACGACGACGAGGCGGTCCGCGTGTTCACTACAGTGAGTGTGAGTCGTCGCACACAAGAA
GCGGCTATCGATGACACGGAGTTTGAAACGAGGCAGAGGAACTACAGACGGAAGAGGTGG
ATGTTGGCGGGAGTCGACCCTGACCTCATGGAAGAAGGATTGGAAGAAATGAGACGCAAA
CGAGTTAAGGCAGCGAAGAAAGCGAAACTAGAAAAGATAAAGAAGATCCAGGCCGACATG
AAGGAGAAAGAAGAAAATACGGGAGATGGACCTCGGGAGGAGGACATTGATAGTTCAATT
AGGACTGGATACAAAAAGGTCAACAAGAAATTAATGAAAAAAGACGACAGGTTCAAAGAC
GTCATCGGAAAAATGAGCAAAATAAAACGAAAAGCAGAAAATATTAAAGAAAAGAGTGAC
GACAGAAATGTCAGAAAGAAAAAGAAGCCGGCTGTGAAATAA
Protein sequence:
MNENVGKDFEELGVKRWLINQLITLGIKTPTPIQKGCIPNILSGQDCIGAAKTGSGKTFA
FALPILQNLAEDPYGIFALVLTPTHELAYQIADQFLILGQPLKLRVCIVTGGSDQLEESL
KLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFTGDLETIFEALPQ
KRQNLLFSATITEDVKESKVLSLNKDNLSTWCDTDTTLTVSTLDQRYVVCPAYARDVYLV
QTLRKYREGAPSSHVIVFTDTKKECQVLSMMLADIGMDNVCLHGFMRQKERVSALAQFRS
NLKCTLIATNVAARGLDIPSVDLVVNHKLPLEPKEYIHRVGRTARAGRSGMAISIITPYD
ILRLGEIEDEIRTKLSEYKIDDDEAVRVFTTVSVSRRTQEAAIDDTEFETRQRNYRRKRW
MLAGVDPDLMEEGLEEMRRKRVKAAKKAKLEKIKKIQADMKEKEENTGDGPREEDIDSSI
RTGYKKVNKKLMKKDDRFKDVIGKMSKIKRKAENIKEKSDDRNVRKKKKPAVK