New model in OGS2.0 | DPOGS201659  |
---|---|
Genomic Position | scaffold1459:- 20100-21326 |
See gene structure | |
CDS Length | 351 |
Paired RNAseq reads   | 102 |
Single RNAseq reads   | 814 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA005413 (1e-24) |
Best Drosophila hit   | spt4 (3e-48) |
Best Human hit | transcription elongation factor SPT4 (4e-46) |
Best NR hit (blastp)   | PREDICTED: similar to spt4 CG12372-PA isoform 2 [Apis mellifera] (1e-57) |
Best NR hit (blastx)   | PREDICTED: similar to spt4 CG12372-PA isoform 2 [Apis mellifera] (1e-58) |
GeneOntology terms    | GO:0016582 non-covalent chromatin modification GO:0005634 nucleus GO:0003682 chromatin binding GO:0008159 positive transcription elongation factor activity GO:0008270 zinc ion binding GO:0045941 positive regulation of transcription |
InterPro families    | IPR016046 Transcription initiation Spt4-like IPR022800 Spt4/RpoE2 zinc finger IPR009287 Transcription initiation Spt4 |
Orthology group | MCL13855 |
Nucleotide sequence:
ATGTCCCTCGACACGGTTCCAAAAGATTTAAGAGGTTTAAGAGCATGTTTAGTTTGTTCT
CTAATTAAGACATTCGATCAGTTCGAATATGATGGCTGTGACAATTGCGATGAGTTTCTC
CGGATGAAGAACAATAAGGACAATGTATATGACTGCACAAGTAACAATTTTGATGGAATG
ATTGCAGTTATGAGCCCTGTTGATAGTTGGGTCTGCAAGTGGCAGAGAATAAGTAGATTT
TGTCAAGGTGTGTATGCTATATCTGTGTCGGGCCGGCTTCCAGCTGGTGTTATAAGAGAA
ATGAAGAGTCGCGGTATCGCCTACAGACCCAGAGACACGAGCCAGAGATAA
Protein sequence:
MSLDTVPKDLRGLRACLVCSLIKTFDQFEYDGCDNCDEFLRMKNNKDNVYDCTSNNFDGM
IAVMSPVDSWVCKWQRISRFCQGVYAISVSGRLPAGVIREMKSRGIAYRPRDTSQR