| New model in OGS2.0 | DPOGS204962 |
|---|---|
| Genomic Position | scaffold1156:+ 15811-25341 |
| See gene structure | |
| CDS Length | 2283 |
| Paired RNAseq reads | 610 |
| Single RNAseq reads | 2048 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011133 (0.0) |
| Best Drosophila hit | suppressor of forked, isoform E (0.0) |
| Best Human hit | cleavage stimulation factor subunit 3 isoform 1 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to Protein suppressor of forked [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to Protein suppressor of forked [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0006379 mRNA cleavage GO:0005848 mRNA cleavage stimulating factor complex GO:0005847 mRNA cleavage and polyadenylation specificity factor complex GO:0005634 nucleus GO:0016070 RNA metabolic process |
| InterPro families | IPR003107 RNA-processing protein, HAT helix IPR008847 Suppressor of forked |
| Orthology group | MCL14263 |
Nucleotide sequence:
ATGAATGATGAAAATGCAGAGATTGACTGGGGTAATGAGAGGTTAAGCCGAGCCCAACGC
GCGGTTGAAGCGAACACGTATGATGTTGATTCGTGGTCTCTCTTGATACGCGAAGCCCAA
ACCCGGCCTATAAATGAGGTCAGAACGATGTATGAGAAGCTCATTACAGCTTTCCCAACA
ACAGGGAGGTATTGGAAGATTTATATCGAACAGGAGATGAAAGCGAGAAATTTTGAGAAG
GTCGAAAAGTTGTTTCAGAGGTGTCTCATGAAGATTCTAAACATTGAACTGTGGAGGCTA
TACCTAAACTACGTTAAGGAGACCAAGTGCATGTTGCCGACATACAAAGAGAAAATGGCG
CAGGCCTACGACTTCGCGTTGGACAAAATAGGTCTGGACATACACGCGTATCCTATATGG
AACGATTACGTAACATTCTTGAAGGCTGTCGAGGCTGTTGGCTCTTACGCTGAGAACCAG
AAGATATCAGCCGTTAGGAAGGTATACCAGAGAGCGGTCATTACCCCGATAATAGGTATT
GAGACGCTGTGGAAAGACTACATCGCTTTCGAACAAGGAATCAACACTATCATAGCTGAG
CGTATGGCTATGGAGCGATCACGGGAATATATGAACGCGAGGAGAGTAGCCAAAGAATTG
GAGACGGTCACCAGGGGCTTGAATAGGAACATGCCGGCCACCCCGCCCACCGCAGACAGG
GAGGAGATGAAGCAGGTGGAGTTGTGGAAGAAGTACATATCCTGGGAGCGCTCCAACCCC
CTCAGGTCGGAGGATACCGCTCTCGTGGCCAGGCGGGTGATGTTCGCTATAGAACAGTGT
CTGCTATGTCTGGCCCACCACCCGGATGTATGGCATCAGGCGGCGCAGTTCCTCGACCAT
TCATCTAAATTACTGCAAGAAAAGGGGGATTCGACAGCCGCCCGTCTGTTCTCCGAGGAG
GCCGGTGCAGTCTACGAGAGAGCCACATCCGGTCCGCTCAAACATTCCACCTTACTGCAC
TTCGCTCACGCCGACTATGAGGAGAGTCGGCTGCATTACAACAAGGTACACCAGGTATAC
ACTCGCTATCTGGATATGGCGGACATCGAACCCACGCTGGCCTACGTTCAATATATGAAG
TTTGCGAGACGAGCTGAAGGTATCAAGTCGGCTAGGACGGTGTTCAAACGAGCCAGGGAA
GACCCGAGATCCCGTTACCACGTGTTCGTGGCGGCCGCCCTCATGGAGTACTACTGCTCC
AAAGACAAGAACATTGCTTTCAGGATATTTGAGTTGGGCCTCAAGAAGTTCTCCCACATT
CCGGAGTATGTGTTGTGCTACATCGACTACCTGTCACATTTGAACGAGGATAACAACACC
CGCGTGTTGTTCGAGCGCGTCCTGTCATCTGGATGTCTGAAGCCGGAGAGTTCTGTTGAT
ATCTGGAATAGATTCCTGGAATTTGAATCCAATATTGGGGACCTCGTCAGTATAGTGAAG
GTTGAGAAACGGAGGCAGGCGGTTCTGGAAAAGATCAAAGAGTTTGAGGGTAAGGAGACG
GCTCAGCTCGTGGACAGATACAAGTTCCTGGATCTCTACCCCTGTACTATAGCTGAACTC
AAGTCCATAGGATACACAGAGGTAGCATCAATGTCGAACAAGTCCTGGGCTCTCGGAGGA
CCGCTTGCTGGCATCTCACCAGAATTGGCCGCTGTGATACTAGGACAGAAAGACAATGAT
CCGAACAAGGACATAGTTCGTCCAGACACAAGTCAAATGATACCCTACAAGCCAAAATCG
AACCCACTCCCCGGAGAGCATCCTATACCAGGTACGTACAAAGACAATGATCCGAACAAG
GACATAGTTCGTCCAGACACAAGTCAAATGATACCCTACAAGCCAAAGTCCAACCCACTC
CCCGGAGAGCATCCTATACCGGGCGGTTCCTTCCCGCTGCCTCCCGCGGCCGCCGCCCTG
TGCACGGCGATGCCTCCCCCCTCCAGCTACAGAGGACCCTTCGTGGCGGTGGACATGCTG
ATAGCACTCTTCAACAGGATCACACTACCCGACAAACCCGCTGCCCCGACCAATGAGAAC
GGCTGTGACACCAAACTGTTTGAGCTGGCTCGCTCCGTCCACTGGATCATGGACGATGAC
ACCACCAAGAATAATACGGCTCGCAGAAGGAAGCTGGGTTCGGACTCGGATGACGACGAG
CTGGGCGCGCCGCCGCCTCTCAACGACGTCTACAGACAGAGACAACAGAAGAGAGTCAAG
TGA
Protein sequence:
MNDENAEIDWGNERLSRAQRAVEANTYDVDSWSLLIREAQTRPINEVRTMYEKLITAFPT
TGRYWKIYIEQEMKARNFEKVEKLFQRCLMKILNIELWRLYLNYVKETKCMLPTYKEKMA
QAYDFALDKIGLDIHAYPIWNDYVTFLKAVEAVGSYAENQKISAVRKVYQRAVITPIIGI
ETLWKDYIAFEQGINTIIAERMAMERSREYMNARRVAKELETVTRGLNRNMPATPPTADR
EEMKQVELWKKYISWERSNPLRSEDTALVARRVMFAIEQCLLCLAHHPDVWHQAAQFLDH
SSKLLQEKGDSTAARLFSEEAGAVYERATSGPLKHSTLLHFAHADYEESRLHYNKVHQVY
TRYLDMADIEPTLAYVQYMKFARRAEGIKSARTVFKRAREDPRSRYHVFVAAALMEYYCS
KDKNIAFRIFELGLKKFSHIPEYVLCYIDYLSHLNEDNNTRVLFERVLSSGCLKPESSVD
IWNRFLEFESNIGDLVSIVKVEKRRQAVLEKIKEFEGKETAQLVDRYKFLDLYPCTIAEL
KSIGYTEVASMSNKSWALGGPLAGISPELAAVILGQKDNDPNKDIVRPDTSQMIPYKPKS
NPLPGEHPIPGTYKDNDPNKDIVRPDTSQMIPYKPKSNPLPGEHPIPGGSFPLPPAAAAL
CTAMPPPSSYRGPFVAVDMLIALFNRITLPDKPAAPTNENGCDTKLFELARSVHWIMDDD
TTKNNTARRRKLGSDSDDDELGAPPPLNDVYRQRQQKRVK