New model in OGS2.0 | DPOGS201519  |
---|---|
Genomic Position | scaffold544:- 683-12793 |
See gene structure | |
CDS Length | 1488 |
Paired RNAseq reads   | 1439 |
Single RNAseq reads   | 3403 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002692 (0.0) |
Best Drosophila hit   | trio, isoform C (7e-12) |
Best Human hit | guanine nucleotide exchange factor DBS isoform a (1e-60) |
Best NR hit (blastp)   | PREDICTED: similar to MCF.2 cell line derived transforming sequence-like [Nasonia vitripennis] (1e-121) |
Best NR hit (blastx)   | PREDICTED: similar to MCF.2 cell line derived transforming sequence-like [Nasonia vitripennis] (2e-113) |
GeneOntology terms    | GO:0005829 cytosol GO:0008624 induction of apoptosis by extracellular signals GO:0005737 cytoplasm GO:0005085 guanyl-nucleotide exchange factor activity GO:0005089 Rho guanyl-nucleotide exchange factor activity GO:0035023 regulation of Rho protein signal transduction GO:0005622 intracellular GO:0005886 plasma membrane GO:0005739 mitochondrion GO:0006915 apoptosis |
InterPro families   | IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal |
Orthology group | MCL12384 |
Nucleotide sequence:
ATGAAAATACGTTTTGAAGTGCCCAACAAATTAGAAATACTTTTTGGAAGAGGTCAGGCT
GAGTGCGATGGATGCGGCAGTGATGAAGAAGGCCGTACTGTGGGCGAGCTGCTGTTGCCG
CAGTACGCTCTGGCGACGGGCGGGCTGGCTCGTGATCACAGACCTCTCATCACATTTCCC
GACAACAACAACTTCCACGTCGTGACAGCCTCCGAGTACAGGAGATTGCTTCTCTACCTT
ACTTCCGTACCTTCATTGCTGGAAGCAGAAATGGGCTTCCACATTATAATAGATCGGAGG
AAAGACAGATGGAATTCAGTCAAAGCAGTGCTATTACGAATATCAGAGTTCTTCCCGGGC
ATTATACATACGGTTTTCGTTCTGCGTCCCGCCAGCTTCCTTCAGAAAGCCCTGTCAGAA
GTCAGCAGCAAACTGTTCAAGGAGGAGTTCCGCTTCCGAGTGATAGTCTGTTCAAGTGTC
GAAGAGTTGTACGAGCACTTCGACAGGTCGCAACTCACGCCGGACTTGGGAGGGGAGCTT
CAATACTCGCATGCAGAATGGATACAACAGCGAATCGCTTTGGAGAAATTTTCCACACTG
ATGAAGGAGATATCGACTAAGCTGGACGAATTTATGCACGAAATAGTCGACTGCGACATG
GGCAACGATCCAACACAAACCAAAGAATTATTAGACTGTCAAGAATCTAGGTATAAGTCT
CTGAAGGCTGAACTGTCATCAGCGACATCTGAGGGCGAGGAGTTGTTGTCTTCGATGCGA
ACACCTCACCTCACTTACAACATCATTAGCCACGTGGCCGCTGTCGAGAGATTAATTGTG
CAGTTAGACGAGACCGAGAAACAGTTCGACAGCTTCTGGGAGAAGCATTCGATGAAATTA
AACCACTGGCTAAAATTCAGAACATTCTTGTTGAACTTCAAACAGATGCAGGCTGCTTTA
GATGGACATTTAAAGACCGCTTGTGACATGACCGAAGTTGGCGAAACTGCAAACAGGGTC
CAAACTCTTCTCCAGGAAGCTATCGAATTTGAAAAACAATGTAACAATGATCTCGACGCT
GCTTCACTCGTTATTGACGAAGGTGAGGTTTTAATGAAGGATCCTCTGAGTTCTGTCGAT
CACATAGAATCAAAGTGTGAGGAGTTAAGACGAACCAGCTCGTTGCTCATAGAAAAAATT
CAAAAACGAAATATGCTATTGACCAAAGCTAGAGAAGTTATGGATAGAATTGATAAGGCT
AATGATTGGTGCGCGACGGGAGTAGAGATCCTCGCCGGCGAAGGAGGTTTGATAGCCGTT
GACAAATCACTAGAAGATGCCAAAAGTTTTGGACTGACGTCACCAGAACAGTTCCGGGAC
ATGCTGATGCAGTCCGCCACCCCAGAGACAAGGGCTCTGGTTACTCAGGTAATGTACTAT
ATCAGAGGTCTTGTTAAATTAAATCTAAGTTTTGAAACCGCCAAATAA
Protein sequence:
MKIRFEVPNKLEILFGRGQAECDGCGSDEEGRTVGELLLPQYALATGGLARDHRPLITFP
DNNNFHVVTASEYRRLLLYLTSVPSLLEAEMGFHIIIDRRKDRWNSVKAVLLRISEFFPG
IIHTVFVLRPASFLQKALSEVSSKLFKEEFRFRVIVCSSVEELYEHFDRSQLTPDLGGEL
QYSHAEWIQQRIALEKFSTLMKEISTKLDEFMHEIVDCDMGNDPTQTKELLDCQESRYKS
LKAELSSATSEGEELLSSMRTPHLTYNIISHVAAVERLIVQLDETEKQFDSFWEKHSMKL
NHWLKFRTFLLNFKQMQAALDGHLKTACDMTEVGETANRVQTLLQEAIEFEKQCNNDLDA
ASLVIDEGEVLMKDPLSSVDHIESKCEELRRTSSLLIEKIQKRNMLLTKAREVMDRIDKA
NDWCATGVEILAGEGGLIAVDKSLEDAKSFGLTSPEQFRDMLMQSATPETRALVTQVMYY
IRGLVKLNLSFETAK